Jeffrey Niu

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I’m a PhD student in the Department of Computer Science at the University of British Columbia supervised by Jiarui Ding and Christian Steidl. I completed by Master’s degree in the same department in 2024. I completed my undergraduate degree in the Department of Computer Science at the University of Toronto, where I worked with Professor Michael M. Hoffman.

My research interests are in developing computational tools for single-cell sequencing data. Currently, I am working on machine learning for various single-cell -omics, including transcriptomics, epigenomics, and multiomics. I also love teaching computer science as I have been a TA for a plethora of courses at UofT and UBC.

news

Sep 1, 2025 Awarded a NSERC PGS-D and the Killam Doctoral Fellowship
Sep 1, 2024 Started my PhD in Computer Science at UBC, funded by a 4YF
Apr 1, 2023 Awarded an NSERC CGS-M
Sep 1, 2022 Started my MSc in computer science at the University of British Columbia

selected publications

  1. Assessing and assuring interoperability of a genomics file format
    Yi Nian Niu, Eric G Roberts, Danielle Denisko, and Michael M Hoffman
    Bioinformatics, 2022
  2. Single-cell multiomics data integration and generation with scPairing
    Jeffrey Niu, Carlos Vasquez-Rios, and Jiarui Ding
    Cell Reports Methods, Nov 2025