% Copyright 2014 by Frank Wood

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\defcitealias{Payne}{Payne, Notes on Running Third Year Projects, 2014.}

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% Author, Title, etc.

\title[] 
{
Saving Oneself \\
\vspace{.25cm}
3YP \\
\vspace{.25cm}
Introductory Lecture
}

\author[Wood]
{
  Frank~Wood\\
  Antoine Jerusalem\\
  Lili Zhang
}

\institute[University of Oxford]
{
  University of Oxford
}

\date[October, 2014]
{October, 2014}

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\begin{document}

%\nofootnotemark
\begin{frame}
  \titlepage
  \vspace{.1cm}
  \centering
 \small\hspace{1cm} \url{http://www.robots.ox.ac.uk/~fwood/teaching/3YP_2014/}
\end{frame}

%\frame[t] {
%\frametitle{Course Characteristic}
%Hard work but fun!
%}

\frame[t] {
\frametitle{Learning Objectives}
\begin{itemize}
\item Open-ended {\bf design}
\item Team work
\item Technical assessment of design alternatives
\item Decision making
\item Presentation
\item Log book usage
\item Joint report writing
\end{itemize}
}

\frame[t] {
\frametitle{Brief Design Brief}
\vspace{3cm}
{\centering \bf Stave off information-theoretic death.\par}
}

\frame[t] {
\frametitle{Design Brief}
Your task will be to {\bf design} hardware, a facility, and
set of computational processes that make it possible to process, scan, and
upload, process (extracting neuronal connections and strengths), and save an entire human
 brain for possible future digital animation for amortised cost of no more than
 \pounds 50k per person. \newline
 
 Example {\bf design} elements could minimally be expected to include high-throughput
 electron or other microscope  {\bf design}, precision cutter  {\bf design}, software infrastructure  {\bf design}, computing
 infrastructure  {\bf design}, process  {\bf design}, and archival mechanism  {\bf design}.
}


\frame[t] {
\frametitle{Design}
``If making cannot start before design is finished, then at least it is clear what the design process has to achieve.'' \citep{cross2008engineering}
}

\frame[t] {
\frametitle{Design}
\begin{figure}[htbp]
\begin{center}
\includegraphics[height=7cm]{fig/designflowchart}
\caption{Process}
\label{fig:designflowchart}
\end{center}
\end{figure}

}

\frame[t] {
\frametitle{Documentation}
``A laboratory notebook (colloq. lab notebook or lab book) is a primary record of research. Researchers use a lab notebook to document their hypotheses, experiments and initial analysis or interpretation of these experiments. The notebook serves as an organizational tool, a memory aid, and can also have a role in protecting any intellectual property that comes from the research.'' \citep{wiki:labnotebook}
}

\frame[t] {
\frametitle{Lab Notebooks}
Should
\begin{itemize}
\item have mistakes and dead-ends
\item show evidence of design considerations and associated calculations
\item show evidence of meetings and teamwork
\item should be only be neat enough to allow
\begin{itemize}
\item IP claims prosecution
\item recovery of effort in the event of death or termination
\end{itemize}
\end{itemize}

Should not
\begin{itemize}
\item consist of quotes from papers
\item contain pasted-in print-outs
\end{itemize}

}

\frame[t] {
\frametitle{Lab Notebook Marking}
\begin{itemize}
\item {\em Reviewed} twice per term
\begin{itemize}
\item Feedback
\item College reporting 
\end{itemize}
\item Mark given but  does {\em not} form part of the examination process.
\end{itemize}


}

\frame[t] {
\frametitle{Team Work}
``Students are expected to identify organise and divide up the tasks within their team and organise their own meetings each week at which they plan and record their progress.''
\newline

``The supervisors do not do the project, and should strongly resist getting involved int he detailed design and running of it.  They are there to advise and not do the work!''
\newline

\citepalias{Payne}
}


\frame[t] {
\frametitle{Personnel Concept}
\begin{itemize}
\item Students : design company employees
\item Faculty : design company executives
\item Customer : rich benefactor
\end{itemize}
}

\frame[t] {
\frametitle{Team Organisation}
\begin{itemize}
\item ``Coopereting'' teams
\item 4 phases, 4 weeks each
\begin{enumerate}
\item Recording technology
\item Chemical, process, and other considerations
\item Data challenges
\item Compression
\end{enumerate}
  \end{itemize}
}

\frame[t] {
\frametitle{Partial schedule}
\begin{figure}[htbp]
\begin{center}
\includegraphics[height=6cm]{fig/michaelmas.png}
\caption{Michaelmas}
\label{fig:mmsched}
\end{center}
\end{figure}
 \small\hspace{1cm} \url{http://www.robots.ox.ac.uk/~fwood/teaching/3YP_2014/}

}


\frame[t] {
\frametitle{Assessment}
Counts as {\bf one paper}.

\begin{block}{Final Report - 60 marks}
The ``deliverable;''a technical report describing the detailed design, its rationale, and costings. Total report limit 30 pg. / student.  {\em Required} formatting detailed in exam regs.  Due 12pm.~Wed.~Week 4 Trinity.
\end{block}
\begin{block}{Final presentation - 20 marks}
5 min.~/ student.  Made in 2nd.-3rd.~wks.~Trinity
\end{block}
\begin{block}{Log book - 10 marks}
Collected at beginning of Trinity
\end{block}
\begin{block}{Contribution to Team Effort - 10 marks}
\end{block}
}

\frame[t] {
\frametitle{Additional Requirements (for your own good)}
\begin{block}{Version control for collaborative writing}
You must use git via bitbucket for version control of your reports and presentations. Each group must create a repository and add {\em fwood} as a collaborator with read permission.
\end{block}
\begin{block}{LaTeX for writing}
You must use latex and bibtex to write your final report and the report must be versioned in the aforementioned git repository. 
\end{block}
\begin{block}{Beamer for presentations}
You must use beamer for presentations (i.e. not powerpoint, keynote, etc.). All presentations must be version controlled as well.
\end{block}
}

\frame[t] {
\frametitle{Challenge}
The human brain is a phenomenally complex organ with very small-scale meaningful structure
requiring nanometer-resolution scans to even possibly be able to
digitally animate.    Besides the challenges of sourcing or building
microscopes capable of processing the required volume, designing automation
machinery, processes, and the like; na\"{\i}ve data capture and processing would require staggering amounts
of storage. As a result powerful machine learning systems and processes also will need to be designed.
}


\subsection{Bibliography}
\bibliographystyle{plainnat}
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\frametitle{References}
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