Computational approaches
for RNA energy parameter estimation.
M. Andronescu, A. Condon,
H.H. Hoos, D.H. Mathews and K.P.
Murphy
- Subject to paper acceptance, we will add online access to our SimFold software with old and new parameters, from the RNAsoft web site.
- Parameter
estimation algorithms
- Secondary structure prediction algorithms
-
Parameter sets
- Download all the results, data sets, and scripts to
generate predictions, tables and figures. [ DOWNLOAD ]
- The directory data contains
all the data produced in this paper (parameter sets, stuctural and
thermodynamic sets)
- The directory scripts contains programs and scripts to
generate predictions, tables and figures shown in the paper.
- See the README file for details on how to run various scripts.
- The directory predictions contains predictions with
various parameter sets, using scripts in the directory scripts.