Main page for NGS aligner project

Quick facts

• project directory: /ubc/cs/research/condon/share/projects/ngs-aligner
• blessed code repository: /ubc/cs/research/condon/share/projects/ngs-aligner/src/ngsa_suite.git

Meetings

• bi-weekly supervisor meeting: every second Tuesday at 13:45, starting February 2nd, 2010

Specifications

Here

Guidelines

• Language: C++
• Coding Style: Google C++ Style
• Version Control: git
• Developer Design Document: sometime later...
• User Manual: to be decided, but here are some references
• Testing: a suite once we get something working, the Maq paper gives some insight into the difficulties and solutions of testing alignments.

Research Journals

Daniel's Journal

Jay's Journal

Short Guides

I should disclaim that I haven't actually tested these... so I wouldn't be surprised to find some errors somewhere...

Creating New TWiki Topics

Setting Up a Git Repository

Using Git During Development

Using CMake

Running bowtie, bwa, Mosaik, and SAMTools

Ticgit and You

Using Valgrind