Difference: SunGridEngine (5 vs. 6)

Revision 62006-05-25 - KevinLeytonBrown

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SunGridEngine - quick user guide

Introduction:

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  As mentioned above, the total number of urgent jobs is limited to 10. This is even true if those are the only jobs on the cluster - in that case (which probably will never happen because many users will have stuff waiting) you can still fill the rest of the cluster with "normal" jobs.
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  • CPLEX and MATLAB if your job uses CPLEX or Matlab, add -l cplex=1 or -l matlab=1 to your qsub command. This will ensure that we don't run more jobs than there are licenses.
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  • CPLEX and MATLAB if your job uses CPLEX or Matlab, add -l cplex=1 or -l matlab=1 to your qsub command. This will ensure that we don't run more jobs than there are licenses. Instructions on how to use CPLEX are found here.
 
  • Array jobs are useful for submitting many similar jobs. In general, you should try to submit a single array job for each big run you're going to do, rather than (e.g.,) invoking qsub in a loop. This makes it easier to pause or delete your jobs, and also imposes less overhead on the scheduler.
    An example of an array job is the one-line script
 
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