RNAstructure

Version 5.1

Copyright 1996 - 2010

by David H. Mathews


Maximum Expected Accuracy Structures

This is a module which generates a subset of structures composed of probable base pairs and single-stranded nucleotides. Using this module will create a group of 8 structures, each composed only of base pairs at a certain probability threshold. These thresholds are: >= 99%, >= 97%, >=95%, >=90%, >= 80%, >= 70%, >= 60%, and >= 50%.


Predicting Maximum Expected Accuracy Structures

  1. Click the button labeled "Partition Function Save File." A dialog box will open to get the name of a PFS file.
  2. A default name is provided for the output file. This can be changed by clicking the "CT File" button.
  3. Change the weight given to pairs by editing the default value for "Gamma."
  4. Change suboptimal structure parameters by changing the appropriate values under "Suboptimal Structure Parameters."
  5. Press the "Start" button.