RNAstructure
Version 5.1
Copyright 1996 - 2010
by David H. Mathews
Maximum Expected Accuracy Structures
This is a module which generates a subset of structures composed of probable base pairs and single-stranded nucleotides. Using this module will create a group of 8 structures, each composed only of base pairs at a certain probability threshold. These thresholds are: >= 99%, >= 97%, >=95%, >=90%, >= 80%, >= 70%, >= 60%, and >= 50%.
Predicting Maximum Expected Accuracy Structures
- Click the button labeled "Partition Function Save File." A dialog box will open to get the name of a PFS file.
- A default name is provided for the output file. This can be changed by clicking the "CT File" button.
- Change the weight given to pairs by editing the default value for "Gamma."
- Change suboptimal structure parameters by changing the appropriate values under "Suboptimal Structure Parameters."
- Press the "Start" button.