> SSTRAND_ID=Bt_PrP; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; GCCCCAUGGAGGUGGCUGGGGCCAGCCUCAUGGAGGUGGCUGGGG ...[[[[[[............((((((]]]]]]....)))))).. ((((((((..(.((((....)))).)..))))).)))........ ((((((((.(((((((....)))).)))))))).)))........ Energy of known structure: -11.64 Initial sens: 0.417, Initial ppv: 0.385, Initial F-measure: 0.400, Initial Energy: -12.27 New DP sens: 0.417, New DP ppv: 0.333, New DP F-measure: 0.370, New DP Energy: -14.04 ((([[[[[[....))).....((((((]]]]]]....)))))).. New DP sens: 1.000, New DP ppv: 0.800, New DP F-measure: 0.889, New DP Energy: -13.89 ((((((..[[[[[...))))))..]]]]].(((......)))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.14 ((((((..........))))))(((((..........)))))... New DP sens: 0.417, New DP ppv: 0.455, New DP F-measure: 0.435, New DP Energy: -12.98 .(((((..........)))))((((((..........)))))).. New DP sens: 0.500, New DP ppv: 0.545, New DP F-measure: 0.522, New DP Energy: -12.98 ((((((((.(((((((....)))).))))))))....)))..... New DP sens: 0.417, New DP ppv: 0.333, New DP F-measure: 0.370, New DP Energy: -12.66 (((((((((.((((((....)))).))))))))....)))..... New DP sens: 0.500, New DP ppv: 0.400, New DP F-measure: 0.444, New DP Energy: -12.38 (((.....[[[[[)))...(((((]]]]].......))))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.76 (((((.....)).)))...(((((.((((...))))))))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.66 ...((((((............[[[[[[))))))....]]]]]].. New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -11.64 ((([[[[[[....)))...(((((...]]]]]]...))))).... New DP sens: 0.500, New DP ppv: 0.429, New DP F-measure: 0.462, New DP Energy: -11.51 .(((((..((((((((....)))).))))...........))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.99 ((((((..........))))))...(((((..........))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.97 ...((((((.((((((....)))).))))))))............ New DP sens: 0.500, New DP ppv: 0.500, New DP F-measure: 0.500, New DP Energy: -10.95 .(((((......((((....))))(((((...)))))...))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.92 .((((((....)))...))).((((((..........)))))).. New DP sens: 0.500, New DP ppv: 0.500, New DP F-measure: 0.500, New DP Energy: -10.90 ((((((..........))))))..(((((...)))))........ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.85 (((((((((...((((....))))...))))))....)))..... New DP sens: 0.500, New DP ppv: 0.462, New DP F-measure: 0.480, New DP Energy: -10.83 (((..........))).....((((((..........)))))).. New DP sens: 0.500, New DP ppv: 0.667, New DP F-measure: 0.571, New DP Energy: -10.53 ..(((.(((......))).(((((.((((...))))))))).))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.50 New DP F-measure-avg: 0.327, New DP F-measure-best: 1.000, New DP best-subopt: 9, New DP num-subopt: 19 > SSTRAND_ID=BWYV; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGCGCGGCACCGUCCGCGGAACAAACGG ..(((((..[[[[)))))......]]]] ..(((((......))))).......... ..(((((..[[[[)))))......]]]] Energy of known structure: -8.02 Initial sens: 0.556, Initial ppv: 1.000, Initial F-measure: 0.714, Initial Energy: -5.14 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.02 ..(((((......))))).......... New DP sens: 0.556, New DP ppv: 1.000, New DP F-measure: 0.714, New DP Energy: -5.14 .(((.....[[[[.))).......]]]] New DP sens: 0.444, New DP ppv: 0.571, New DP F-measure: 0.500, New DP Energy: -4.61 .........(((.[[[)))......]]] New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.14 ((.......))..(((.........))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.03 .........(((....)))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.77 ((((......))))..((.......)). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.67 .(((..........)))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.59 .........((((...........)))) New DP sens: 0.444, New DP ppv: 1.000, New DP F-measure: 0.615, New DP Energy: -1.39 New DP F-measure-avg: 0.314, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 8 > SSTRAND_ID=Ec_PK1; TYPE=tmRNA; EXT_SOURCE=van Batenburg et al 2001; CGAGGGGCGGUUGGCCUCGUAAAAAGCCGC [[[[[.((((((..]]]]].....)))))) (((((.[[[[[[..))))).....]]]]]] (((((.[[[[[[..))))).....]]]]]] Energy of known structure: -9.10 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -9.10 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -9.10 ((((([[[......)))))......]]].. New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -6.99 ...((([[[[[[..))).......]]]]]] New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -5.73 ...(((((.....)))))............ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.08 ......((((((............)))))) New DP sens: 0.545, New DP ppv: 1.000, New DP F-measure: 0.706, New DP Energy: -5.02 (((((.........)))))........... New DP sens: 0.455, New DP ppv: 1.000, New DP F-measure: 0.625, New DP Energy: -4.66 ......((((.[[[[.)))).....]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.20 ((.....))..((((..........)))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.96 .....(((((....)).........))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.92 ...(((........)))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.16 New DP F-measure-avg: 0.346, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 9 > SSTRAND_ID=Ec_PK4; TYPE=tmRNA; EXT_SOURCE=van Batenburg et al 2001; GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGAC ((((((((((.(((.[[[.[[[))).)))))))))).........]]].]]] ((((((((((.(((........))).))))))))))................ ((((((((((.(((........))).))))))))))................ Energy of known structure: -12.24 Initial sens: 0.684, Initial ppv: 1.000, Initial F-measure: 0.812, Initial Energy: -11.01 New DP sens: 0.684, New DP ppv: 1.000, New DP F-measure: 0.812, New DP Energy: -11.01 ((((((((((((((....)))).[[[))))))))))...]]].......... New DP sens: 0.526, New DP ppv: 0.588, New DP F-measure: 0.556, New DP Energy: -9.04 ((((((((((((((....))))....))))))))))................ New DP sens: 0.526, New DP ppv: 0.714, New DP F-measure: 0.606, New DP Energy: -8.41 ((((((((((.[[[[...........))))))))))..]]]].......... New DP sens: 0.526, New DP ppv: 0.714, New DP F-measure: 0.606, New DP Energy: -7.52 New DP F-measure-avg: 0.645, New DP F-measure-best: 0.812, New DP best-subopt: 0, New DP num-subopt: 3 > SSTRAND_ID=EC_S15; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; GGGAUCGCUGAAUUAGAGAUCGGCGUCCUUUCAUUCUAUAUACUUUGGAGUUUUAAAAUGUCUCUAA ((((.((((((.[[[[[[[))))))))))...............................]]]]]]] ((((.((((((........))))))))))...............((((((...........)))))) ((((.((((((..[[[[[.))))))))))....]]]]]......((((((...........)))))) Energy of known structure: -10.25 Initial sens: 0.588, Initial ppv: 0.625, Initial F-measure: 0.606, Initial Energy: -10.69 New DP sens: 0.588, New DP ppv: 0.476, New DP F-measure: 0.526, New DP Energy: -11.98 (((..((((((..[[[[[.))))))))).....]]]]]......((((((...........)))))) New DP sens: 0.353, New DP ppv: 0.300, New DP F-measure: 0.324, New DP Energy: -10.90 ((((.((((((........))))))))))...............((((((...........)))))) New DP sens: 0.588, New DP ppv: 0.625, New DP F-measure: 0.606, New DP Energy: -10.69 ((((.((((((........))))))))))...((((((.......))))))................ New DP sens: 0.588, New DP ppv: 0.625, New DP F-measure: 0.606, New DP Energy: -9.38 (((((.(((((........))))))))))...............((((((...........)))))) New DP sens: 0.529, New DP ppv: 0.562, New DP F-measure: 0.545, New DP Energy: -9.33 (((..((((((........)))))))))................((((((...........)))))) New DP sens: 0.353, New DP ppv: 0.400, New DP F-measure: 0.375, New DP Energy: -9.31 .....((((((..[[[[[.))))))........]]]]]......((((((...........)))))) New DP sens: 0.353, New DP ppv: 0.353, New DP F-measure: 0.353, New DP Energy: -9.12 ((((.((((((..[[[[[.))))))))))....]]]]]........(((...........))).... New DP sens: 0.588, New DP ppv: 0.556, New DP F-measure: 0.571, New DP Energy: -8.66 (((((((((((........)))))).......((((((.......))))))........)))))... New DP sens: 0.353, New DP ppv: 0.353, New DP F-measure: 0.353, New DP Energy: -8.10 (((((.(((((........))))))))))...((((((.......))))))................ New DP sens: 0.529, New DP ppv: 0.562, New DP F-measure: 0.545, New DP Energy: -8.02 (((..((((((........)))))))))....((((((.......))))))................ New DP sens: 0.353, New DP ppv: 0.400, New DP F-measure: 0.375, New DP Energy: -8.00 ((((.((((((.[[[[[[.)))))))))).............]]]]]]................... New DP sens: 0.588, New DP ppv: 0.625, New DP F-measure: 0.606, New DP Energy: -7.90 .....((((((........))))))...................((((((...........)))))) New DP sens: 0.353, New DP ppv: 0.500, New DP F-measure: 0.414, New DP Energy: -7.89 (((((.......[[[[[[[[....)))))...((((((.......))))))........]]]]]]]] New DP sens: 0.647, New DP ppv: 0.579, New DP F-measure: 0.611, New DP Energy: -7.87 (((((((((((........)))))).......))))).......((((((...........)))))) New DP sens: 0.353, New DP ppv: 0.353, New DP F-measure: 0.353, New DP Energy: -7.80 (((((...[[[[{{{{{{{{....)))))]]]].((((.......))))..........}}}}}}}} New DP sens: 0.647, New DP ppv: 0.524, New DP F-measure: 0.579, New DP Energy: -7.79 (((((..[[[[[{{{{{{{{....)))))..............]]]]]...........}}}}}}}} New DP sens: 0.647, New DP ppv: 0.611, New DP F-measure: 0.629, New DP Energy: -7.76 (((..((((((..[[[[[.))))))))).....]]]]]........(((...........))).... New DP sens: 0.353, New DP ppv: 0.353, New DP F-measure: 0.353, New DP Energy: -7.58 ((((.((((((........)))))))))).................(((...........))).... New DP sens: 0.588, New DP ppv: 0.769, New DP F-measure: 0.667, New DP Energy: -7.37 (((((...[[[[.{{{{{......)))))]]]]}}}}}......((((((...........)))))) New DP sens: 0.235, New DP ppv: 0.200, New DP F-measure: 0.216, New DP Energy: -7.25 New DP F-measure-avg: 0.480, New DP F-measure-best: 0.667, New DP best-subopt: 18, New DP num-subopt: 19 > SSTRAND_ID=HDV; TYPE=hepatitis delta virus ribozyme; EXT_SOURCE=Isambert and Siggia 2000; ggccggcatggtcccagcctcctcgctggcgccggctgggcaacauuccgaggggaccguccccucgguaauggcgaaugggaccca [[[[[[[..((((((((((........)))]]]]]]]......(((((((((((((...))))))))).)))).....))))))).. .((((((..[[[[[[[[[[[...{{{{...)))))).]]]]......(((((((((...)))))))))....}}}}..]]]]]]].. .((((((..[[[[[[[[[[[...{{{{{..)))))).]]]]......(((((((((...)))))))))...}}}}}..]]]]]]].. Energy of known structure: -29.25 Initial sens: 0.733, Initial ppv: 0.733, Initial F-measure: 0.733, Initial Energy: -30.58 New DP sens: 0.733, New DP ppv: 0.710, New DP F-measure: 0.721, New DP Energy: -31.20 .((((((..[[[[[[[(((........)))))))))...((..(((((((((((((...))))))))).))))))...]]]]]]].. New DP sens: 0.967, New DP ppv: 0.935, New DP F-measure: 0.951, New DP Energy: -29.40 .((((((..[[[[[[[(((........))))))))).......(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.967, New DP ppv: 1.000, New DP F-measure: 0.983, New DP Energy: -28.33 .((((((..[[[[[[[[[[[..........)))))).]]]]..(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.867, New DP ppv: 0.867, New DP F-measure: 0.867, New DP Energy: -28.32 .((((((.....[[[[[[[.....))))))...]]]]]]]...(((((((((((((...))))))))).)))).............. New DP sens: 0.433, New DP ppv: 0.500, New DP F-measure: 0.464, New DP Energy: -28.18 (.(((((.((((.(((((......))))).))))))))).)..(((((((((((((...))))))))).)))).............. New DP sens: 0.433, New DP ppv: 0.464, New DP F-measure: 0.448, New DP Energy: -28.06 .((((((..[[[[[[[[[[[....)))))).......]]]]..(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.667, New DP ppv: 0.667, New DP F-measure: 0.667, New DP Energy: -28.02 .((((((..[[[[[[[.......[[[[[..))))))..(....)...(((((((((...)))))))))...]]]]]..]]]]]]].. New DP sens: 0.733, New DP ppv: 0.786, New DP F-measure: 0.759, New DP Energy: -27.33 .((((((......(((((......))))).))))))((((...(((((((((((((...)))))))))........))))...)))) New DP sens: 0.500, New DP ppv: 0.536, New DP F-measure: 0.517, New DP Energy: -26.91 ..(((((..(((.(((((......))))).))).)))))....(((((((((((((...))))))))).)))).............. New DP sens: 0.433, New DP ppv: 0.500, New DP F-measure: 0.464, New DP Energy: -26.45 .((((((.....[[[[[[[.....))))))...]]]]]]].......(((((((((...)))))))))...(((..........))) New DP sens: 0.300, New DP ppv: 0.360, New DP F-measure: 0.327, New DP Energy: -26.26 (.(((((.((((.(((((......))))).))))))))).)......(((((((((...)))))))))...(((..........))) New DP sens: 0.300, New DP ppv: 0.333, New DP F-measure: 0.316, New DP Energy: -26.14 ..(((((..(((.(((((......))))).))).)))))((..(((((((((((((...))))))))).))))))............ New DP sens: 0.433, New DP ppv: 0.464, New DP F-measure: 0.448, New DP Energy: -26.08 .((((((..[[[[[[[........))))))(((.....)))..(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.667, New DP ppv: 0.690, New DP F-measure: 0.678, New DP Energy: -26.06 ..(((((..[[[[[[[(((........)))....)))))....(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.767, New DP ppv: 0.821, New DP F-measure: 0.793, New DP Energy: -26.01 ..(((((..[[[[[[[(((........)))....)))))((..(((((((((((((...))))))))).))))))...]]]]]]].. New DP sens: 0.767, New DP ppv: 0.767, New DP F-measure: 0.767, New DP Energy: -26.00 .........(((((((((((((..((....)).))..))))..(((((((((((((...))))))))).)))).....))))))).. New DP sens: 0.667, New DP ppv: 0.714, New DP F-measure: 0.690, New DP Energy: -25.61 .((((((......(((((......))))).)))))).......(((((((((((((...))))))))).)))).............. New DP sens: 0.633, New DP ppv: 0.792, New DP F-measure: 0.704, New DP Energy: -25.58 .((((((..[[[[[[[(((........)))))))))..(....)...(((((((((...)))))))))..........]]]]]]].. New DP sens: 0.833, New DP ppv: 0.962, New DP F-measure: 0.893, New DP Energy: -25.42 .........(((((((((((....((((....)))).))))..(((((((((((((...))))))))).)))).....))))))).. New DP sens: 0.667, New DP ppv: 0.714, New DP F-measure: 0.690, New DP Energy: -25.38 New DP F-measure-avg: 0.657, New DP F-measure-best: 0.983, New DP best-subopt: 2, New DP num-subopt: 19 > SSTRAND_ID=HDV_anti; TYPE=anti-genomic HDV; EXT_SOURCE=Ferre-D'Amareand et al 1998; GGGUCGGCAUGGCAUCUCCACCUCCUCGCGGUCCGACCUGGGCAUCCGAAGGAGGACGCACGUCCACUCGGAUGGCUAAGGGAGAGCCACU .((((((........[[[[(((.......)))))))))....(((((((....((((....))))..)))))))......]]]]....... .........((((.(((((.((((((((..((((.....))))...)).))))))..((.(((((....)))))))....))))))))).. (((((((..[[[[.[[[[[.[[[[[[......)))))))...(((((((]]]]]]............)))))))......]]]]]]]]].. Energy of known structure: -17.54 Initial sens: 0.167, Initial ppv: 0.143, Initial F-measure: 0.154, Initial Energy: -23.91 New DP sens: 0.708, New DP ppv: 0.586, New DP F-measure: 0.642, New DP Energy: -26.51 (((((((..[[[[.[[[[[(((.......))))))))))((.(((((((....((((....))))..))))))).))...]]]]]]]]].. New DP sens: 1.000, New DP ppv: 0.750, New DP F-measure: 0.857, New DP Energy: -24.92 (((((((..[[[[.[[[[[(((.......))))))))))...(((((((....((((....))))..)))))))......]]]]]]]]].. New DP sens: 1.000, New DP ppv: 0.800, New DP F-measure: 0.889, New DP Energy: -24.16 (((((((..[[[[.[[[[[...[[[[[.....)))))))...(((((((..]]]]]...........)))))))......]]]]]]]]].. New DP sens: 0.708, New DP ppv: 0.607, New DP F-measure: 0.654, New DP Energy: -24.07 (((((((..[[[[.[[[[[.[[[[[[[[....))))))).......]].]]]]]]..((.(((((....)))))))....]]]]]]]]].. New DP sens: 0.417, New DP ppv: 0.323, New DP F-measure: 0.364, New DP Energy: -24.02 .........((((.(((((.((((((((..((((.....))))...)).))))))..((.(((((....)))))))....))))))))).. New DP sens: 0.167, New DP ppv: 0.143, New DP F-measure: 0.154, New DP Energy: -23.91 ((((((...[[[[.[[[[[.[[[[[[..))))))........(((((((]]]]]]............)))))))......]]]]]]]]].. New DP sens: 0.458, New DP ppv: 0.393, New DP F-measure: 0.423, New DP Energy: -23.16 ...((((..[[[[.[[[[[.[[[[[[....{{{{{{..{{{{{..))))]]]]]]......}}}}}.}}}}}}.......]]]]]]]]].. New DP sens: 0.167, New DP ppv: 0.133, New DP F-measure: 0.148, New DP Energy: -23.14 (((((((..[[[[........[[[[[......)))))))((.(((((((....((((....))))..))))))).))..]]]]].]]]].. New DP sens: 0.708, New DP ppv: 0.586, New DP F-measure: 0.642, New DP Energy: -22.91 (((((((..[[[[.[[[[[.[[[[[[......)))))))((....))..]]]]]]..((.(((((....)))))))....]]]]]]]]].. New DP sens: 0.417, New DP ppv: 0.323, New DP F-measure: 0.364, New DP Energy: -22.31 .........((((.(((((.((((((((..((((.....))))...)).)))))).....(((((....)))))......))))))))).. New DP sens: 0.167, New DP ppv: 0.154, New DP F-measure: 0.160, New DP Energy: -22.29 (((((((.......[[[[[.[[[[[[......)))))))...(((((((]]]]]]............)))))))......]]]]]...... New DP sens: 0.708, New DP ppv: 0.680, New DP F-measure: 0.694, New DP Energy: -22.18 (((((((..[[[[.[[[[[..{{{{{......)))))))...(((((((.]]]]]............))))))).....}}}}}.]]]].. New DP sens: 0.542, New DP ppv: 0.464, New DP F-measure: 0.500, New DP Energy: -22.17 (((((((..[[[[........[[[[[......)))))))...(((((((....((((....))))..))))))).....]]]]].]]]].. New DP sens: 0.708, New DP ppv: 0.630, New DP F-measure: 0.667, New DP Energy: -22.15 .........((((.(((((.((((((....(((((...)))))......))))))..((.(((((....)))))))....))))))))).. New DP sens: 0.167, New DP ppv: 0.148, New DP F-measure: 0.157, New DP Energy: -21.94 (((((((..[[[[.[[[[[.[[[[[[[[....))))))).......]].]]]]]].....(((((....)))))......]]]]]]]]].. New DP sens: 0.417, New DP ppv: 0.345, New DP F-measure: 0.377, New DP Energy: -21.91 ((((((...[[[[.[[[[[.........))))))....(((.(((((((....((((....))))..))))))).)))..]]]]]]]]].. New DP sens: 0.625, New DP ppv: 0.517, New DP F-measure: 0.566, New DP Energy: -21.87 ((((.....[[[[.[[[[[))))....((.((((((..(((((...((........))...))))).)))))).))....]]]]]]]]].. New DP sens: 0.167, New DP ppv: 0.143, New DP F-measure: 0.154, New DP Energy: -21.32 (((((((..[[[[.......[[[[[[......)))))))...(((((((]]]]]]............)))))))...........]]]].. New DP sens: 0.542, New DP ppv: 0.542, New DP F-measure: 0.542, New DP Energy: -21.11 (((((((..[[[[.[[[[[(((.......))))))))))..((.(((......))).)).(((((....)))))......]]]]]]]]].. New DP sens: 0.542, New DP ppv: 0.448, New DP F-measure: 0.491, New DP Energy: -20.89 New DP F-measure-avg: 0.472, New DP F-measure-best: 0.889, New DP best-subopt: 2, New DP num-subopt: 19 > SSTRAND_ID=HIVRT32; TYPE=HIV-1-RT ligand RNA; EXT_SOURCE=Turek et al 1992; UCAAGUAUUCCGAAGCUCAACGGGAAAAUGAGCUA .......[[[[[.((((((.]]]]]...)))))). .......(((((.[[[[[[.)))))...]]]]]]. .......(((((.[[[[[[.)))))...]]]]]]. Energy of known structure: -7.92 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -7.92 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -7.92 .......((((..[[[[[[...))))..]]]]]]. New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -7.16 .............((((((.........)))))). New DP sens: 0.545, New DP ppv: 1.000, New DP F-measure: 0.706, New DP Energy: -5.22 ...(((.[[[[[..)))...]]]]].......... New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -3.68 .......(((((........))))).......... New DP sens: 0.455, New DP ppv: 1.000, New DP F-measure: 0.625, New DP Energy: -2.60 ...(((.[[[[...))).....]]]]......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.54 .......((((...........))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.28 New DP F-measure-avg: 0.490, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 6 > SSTRAND_ID=HIVRT322; TYPE=HIV-1-RT ligand RNA; EXT_SOURCE=Turek et al 1992; UCAAGUAUUCCGAAGGGUAACGGGAAAAUGCCCUA .......[[[[[.((((((.]]]]]...)))))). .......(((((.[[[[[[.)))))...]]]]]]. .......(((((.[[[[[[.)))))...]]]]]]. Energy of known structure: -7.41 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -7.41 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -7.41 .......((((..[[[[[[...))))..]]]]]]. New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -6.65 .........((....))....(((......))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.71 .............((((((.........)))))). New DP sens: 0.545, New DP ppv: 1.000, New DP F-measure: 0.706, New DP Energy: -4.65 .....(((((....)))))..(((......))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.10 .......(((((..[[[...)))))......]]]. New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -3.75 ....(((((((....))....[[[..)))))]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.73 .........((....))....(((.......))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.66 .......((((...[[[.....)))).....]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.67 ........(((...)))....(((......))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.62 .......(((((........))))).......... New DP sens: 0.455, New DP ppv: 1.000, New DP F-measure: 0.625, New DP Energy: -2.60 .....(((((....)))))..(((.......))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.05 ....(((((.....[[[.........)))))]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.97 New DP F-measure-avg: 0.264, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 12 > SSTRAND_ID=HIVRT33; TYPE=HIV-1-RT ligand RNA; EXT_SOURCE=Turek et al 1992; UCAAGUAUUCCGAAGCUUGACGGGAAAAUAAGCUA .......[[[[[.((((((.]]]]]...)))))). .......(((((.[[[[[[.)))))...]]]]]]. ((((((.[[[[[..))))))]]]]].......... Energy of known structure: -6.09 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -6.09 New DP sens: 0.455, New DP ppv: 0.455, New DP F-measure: 0.455, New DP Energy: -6.32 .......(((((.[[[[[[.)))))...]]]]]]. New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.09 ((((((.[[[[...))))))..]]]]......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.87 .......((((..[[[[[[...))))..]]]]]]. New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -5.33 ((((((........))))))............... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.94 .............((((((.........)))))). New DP sens: 0.545, New DP ppv: 1.000, New DP F-measure: 0.706, New DP Energy: -2.84 .......(((((........))))).......... New DP sens: 0.455, New DP ppv: 1.000, New DP F-measure: 0.625, New DP Energy: -2.60 .......((((...........))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.28 ...(((.(((((........)))))......))). New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -1.22 ...(((.((((...........)))).....))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.56 New DP F-measure-avg: 0.388, New DP F-measure-best: 1.000, New DP best-subopt: 1, New DP num-subopt: 9 > SSTRAND_ID=Hs_Prp; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; GCCUCAUGGUGGUGGCUGGGGGCAGCCUCAUGGUGGUGGCUGGGG ...((((((.............[[[[[))))))....]]]]]... (((((((.((((.(((((....))))))))).)))).)))..... (((((((.((((.(((((....))))))))).)))).)))..... Energy of known structure: -7.59 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -13.44 New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.44 .((((.((((....))))))))(((((..........)))))... New DP sens: 0.455, New DP ppv: 0.385, New DP F-measure: 0.417, New DP Energy: -10.59 .(((((..........))))).(((((..........)))))... New DP sens: 0.455, New DP ppv: 0.500, New DP F-measure: 0.476, New DP Energy: -10.10 (((((.......[[[[[[))))).(((....)))..]]]]]]... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.02 .((((((.((((.(((((....))))))))).)))......))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.93 (((((..(((....))).)))))..(((((..........))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.63 New DP F-measure-avg: 0.149, New DP F-measure-best: 0.476, New DP best-subopt: 2, New DP num-subopt: 5 > SSTRAND_ID=LP_PK1; TYPE=tmRNA; EXT_SOURCE=van Batenburg et al 2001; CGAGAAGGAGAUCUCUCGUAAAUAAGACUC [[[[[..(((.((]]]]].......))))) (((((........)))))............ (((((.(....).)))))............ Energy of known structure: -4.53 Initial sens: 0.500, Initial ppv: 1.000, Initial F-measure: 0.667, Initial Energy: -2.86 New DP sens: 0.500, New DP ppv: 0.833, New DP F-measure: 0.625, New DP Energy: -3.13 .((((......))))............... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.23 ......(((....))).............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: 0.38 New DP F-measure-avg: 0.208, New DP F-measure-best: 0.625, New DP best-subopt: 0, New DP num-subopt: 2 > SSTRAND_ID=minimalIBV; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGGGUAUCAGUCAGGCUCGGCUGGUACCCCUUGCAAAGCGAGCCU (((((((((((..[[[[[[)))))))))))........]]]]]]. ((((((((((((......))))))))))))............... ((((((((((((..[[[.))))))))))))......]]]...... Energy of known structure: -19.10 Initial sens: 0.647, Initial ppv: 0.917, Initial F-measure: 0.759, Initial Energy: -14.35 New DP sens: 0.647, New DP ppv: 0.733, New DP F-measure: 0.688, New DP Energy: -15.44 ((((((((((((......))))))))))))..((.......)).. New DP sens: 0.647, New DP ppv: 0.786, New DP F-measure: 0.710, New DP Energy: -14.65 .(((((((((((......)))))))))))(((((...)))))... New DP sens: 0.588, New DP ppv: 0.625, New DP F-measure: 0.606, New DP Energy: -13.10 New DP F-measure-avg: 0.668, New DP F-measure-best: 0.710, New DP best-subopt: 1, New DP num-subopt: 2 > SSTRAND_ID=MMTV; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGGGCAGUCCCCUAGCCCCACUCAAAAGGGGGAU [[[[[..((((((.]]]]]........)))))). (((((.[[[[[[[.)))))........]]]]]]] (((((.[[[[[[[.)))))........]]]]]]] Energy of known structure: -12.71 Initial sens: 1.000, Initial ppv: 0.917, Initial F-measure: 0.957, Initial Energy: -13.23 New DP sens: 1.000, New DP ppv: 0.917, New DP F-measure: 0.957, New DP Energy: -13.23 (((((..[[[[[[.))))).......]]]]]].. New DP sens: 0.455, New DP ppv: 0.455, New DP F-measure: 0.455, New DP Energy: -12.24 (((((....[[[[.))))).........]]]].. New DP sens: 0.455, New DP ppv: 0.556, New DP F-measure: 0.500, New DP Energy: -10.15 (((((..[[[[...)))))........]]]]... New DP sens: 0.455, New DP ppv: 0.556, New DP F-measure: 0.500, New DP Energy: -9.53 ((((....))))...((((........))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.43 .(((..[[[[[[[...)))........]]]]]]] New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -9.33 (((...[[[[[[[..))).........]]]]]]] New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -8.51 (((((.........))))).(((....))).... New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -8.39 ((((....))))...((((.........)))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.38 .(((...[[[[[[...))).......]]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.35 (((((.....[[[.)))))..........]]].. New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -8.11 (((((..[[[....)))))........]]].... New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -7.54 (((....[[[[[[..)))........]]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.53 ((((.....))))..((((........))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.49 ((((....))))...(((.........))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.98 ((((...))))....((((........))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.51 ((((.....))))..((((.........)))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.44 ......(((((((..............))))))) New DP sens: 0.545, New DP ppv: 0.857, New DP F-measure: 0.667, New DP Energy: -6.41 ((((....))))....(((..........))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.28 .(((......)))..((((........))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.69 New DP F-measure-avg: 0.290, New DP F-measure-best: 0.957, New DP best-subopt: 0, New DP num-subopt: 19 > SSTRAND_ID=MMTV_vpk; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGCGCAGUGGGUCAGCGCCACUCAAAAGGCCCAU [[[[[..((((((.]]]]]........)))))). (((((.[[[[[[[.)))))........]]]]]]] (((((.[[[[[[[.)))))........]]]]]]] Energy of known structure: -11.07 Initial sens: 1.000, Initial ppv: 0.917, Initial F-measure: 0.957, Initial Energy: -11.59 New DP sens: 1.000, New DP ppv: 0.917, New DP F-measure: 0.957, New DP Energy: -11.59 (((((..[[[[[..)))))]]]]].......... New DP sens: 0.455, New DP ppv: 0.500, New DP F-measure: 0.476, New DP Energy: -8.02 (((((.........)))))............... New DP sens: 0.455, New DP ppv: 1.000, New DP F-measure: 0.625, New DP Energy: -6.54 (((....(((((.......)))))....)))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.02 ......(((((((..............))))))) New DP sens: 0.545, New DP ppv: 0.857, New DP F-measure: 0.667, New DP Energy: -5.96 (((..(((((.......)))))......)))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.21 .......(((((....[[[)))))...]]].... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.99 .....(((((.......)))))............ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.19 (((.......)))...(((........))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.40 (((......(((....))).........)))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.67 New DP F-measure-avg: 0.272, New DP F-measure-best: 0.957, New DP best-subopt: 0, New DP num-subopt: 9 > SSTRAND_ID=pKA_A; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGCCGCCAGGCUCCAGCGGCCUUGCAAAAGGAGCCU [[[[[[..((((((.]]]]]]........)))))). ((((((.[[[[[[[.))))))........]]]]]]] ((((((.[[[[[[[.))))))........]]]]]]] Energy of known structure: -15.26 Initial sens: 1.000, Initial ppv: 0.923, Initial F-measure: 0.960, Initial Energy: -15.01 New DP sens: 1.000, New DP ppv: 0.923, New DP F-measure: 0.960, New DP Energy: -15.01 ....((([[[[[[[...))).........]]]]]]] New DP sens: 0.500, New DP ppv: 0.600, New DP F-measure: 0.545, New DP Energy: -9.26 ........((((((....((...))....)))))). New DP sens: 0.500, New DP ppv: 0.750, New DP F-measure: 0.600, New DP Energy: -8.84 ((((((.........))))))..((.......)).. New DP sens: 0.500, New DP ppv: 0.750, New DP F-measure: 0.600, New DP Energy: -8.82 ((((....))))...((..((((....)))).)).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.66 .......(((((((.((......))....))))))) New DP sens: 0.500, New DP ppv: 0.667, New DP F-measure: 0.571, New DP Energy: -7.50 ((((....)))).....((((((....)))..))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.25 (((.((.((((.......)))).)).......))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.96 ((((((.........))).((((....)))).))). New DP sens: 0.250, New DP ppv: 0.300, New DP F-measure: 0.273, New DP Energy: -6.27 ((((....)))).......((((....))))..... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.02 (((([[[.)))).....]]](((....)))...... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.78 New DP F-measure-avg: 0.323, New DP F-measure-best: 0.960, New DP best-subopt: 0, New DP num-subopt: 10 > SSTRAND_ID=satRPV; TYPE=ribozyme; EXT_SOURCE=van Batenburg et al 2001; ACAGAGCGCGUACUGUCUGACGACGUAUCCGCGCGGACUAGAAGGCUGGUGCCUCGUCCAACAAAUAGAUACA ((((.[[[[[..))))........(((((]]]]]((((....((((....)))).))))........))))). ((((.[[[[[..))))..(((((.{{{{{]]]]](((((((....))))).))))))).........}}}}}. .(((([[[[[.....)))).....(((((]]]]]((((..((.(((....)))))))))........))))). Energy of known structure: -13.06 Initial sens: 0.636, Initial ppv: 0.538, Initial F-measure: 0.583, Initial Energy: -13.47 New DP sens: 0.773, New DP ppv: 0.739, New DP F-measure: 0.756, New DP Energy: -13.92 .(((([[[[[.....)))).....(((((]]]]]((((....((((....)))).))))........))))). New DP sens: 0.818, New DP ppv: 0.818, New DP F-measure: 0.818, New DP Energy: -13.81 ((((.[[[[[..))))..(((((.{{{{{]]]]]..(((((....)))))...))))).........}}}}}. New DP sens: 0.636, New DP ppv: 0.583, New DP F-measure: 0.609, New DP Energy: -13.65 ((((.[[[[[..))))..(((((.{{{{{]]]]](((((((....))))).))))))).........}}}}}. New DP sens: 0.636, New DP ppv: 0.538, New DP F-measure: 0.583, New DP Energy: -13.47 ((((.[[[[[..))))........(((((]]]]]((((..((.(((....)))))))))........))))). New DP sens: 0.955, New DP ppv: 0.913, New DP F-measure: 0.933, New DP Energy: -13.17 ((((.[[[[[..))))........(((((]]]]]((((....((((....)))).))))........))))). New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -13.06 .....((((((((.(((....))))))..)))))((((..((.(((....))))))))).............. New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -13.04 ((((..[[[[[.))))..(((((.{{{{{.]]]]].(((((....)))))...))))).........}}}}}. New DP sens: 0.409, New DP ppv: 0.375, New DP F-measure: 0.391, New DP Energy: -13.03 .....((((((((.(((....))))))..)))))((((....((((....)))).)))).............. New DP sens: 0.591, New DP ppv: 0.684, New DP F-measure: 0.634, New DP Energy: -12.93 .....(((((....(((....))).....)))))((((..((.(((....))))))))).............. New DP sens: 0.545, New DP ppv: 0.706, New DP F-measure: 0.615, New DP Energy: -12.86 .....(((((....(((....))).....)))))((((....((((....)))).)))).............. New DP sens: 0.591, New DP ppv: 0.812, New DP F-measure: 0.684, New DP Energy: -12.75 .(((([[[[[.....))))..........]]]]]((((..((.(((....))))))))).............. New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -12.70 .(((([[[[[.....))))..........]]]]]((((....((((....)))).)))).............. New DP sens: 0.591, New DP ppv: 0.765, New DP F-measure: 0.667, New DP Energy: -12.59 .....(((((........[[[[[.{{{{{)))))..(((((....)))))...]]]]].........}}}}}. New DP sens: 0.455, New DP ppv: 0.500, New DP F-measure: 0.476, New DP Energy: -12.46 .....(((((........[[[[[.{{{{{)))))(((((((....))))).))]]]]].........}}}}}. New DP sens: 0.455, New DP ppv: 0.455, New DP F-measure: 0.455, New DP Energy: -12.28 .....(((((....[[[[{{{{{.<<<<<)))))........]]]].......}}}}}.........>>>>>. New DP sens: 0.455, New DP ppv: 0.526, New DP F-measure: 0.488, New DP Energy: -12.06 ((((.[[[[[..)))).............]]]]]((((..((.(((....))))))))).............. New DP sens: 0.727, New DP ppv: 0.889, New DP F-measure: 0.800, New DP Energy: -11.95 .....(((((....(((....)))[[[[[)))))((((..((.(((....)))))))))........]]]]]. New DP sens: 0.773, New DP ppv: 0.773, New DP F-measure: 0.773, New DP Energy: -11.95 ((((.[[[[[..)))).............]]]]]((((....((((....)))).)))).............. New DP sens: 0.773, New DP ppv: 1.000, New DP F-measure: 0.872, New DP Energy: -11.84 .....(((((....(((....)))[[[[[)))))((((....((((....)))).))))........]]]]]. New DP sens: 0.818, New DP ppv: 0.857, New DP F-measure: 0.837, New DP Energy: -11.84 New DP F-measure-avg: 0.678, New DP F-measure-best: 1.000, New DP best-subopt: 5, New DP num-subopt: 19 > SSTRAND_ID=SRV_1; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGGGCCAGCCCCAGGCCCCGAAACAAGCUUAUGGGGCA ((((((.[[[[[.)))))).............]]]]]. ((((((.[[[[[[))))))............]]]]]]. ((((((.[[[[[[))))))............]]]]]]. Energy of known structure: -14.71 Initial sens: 1.000, Initial ppv: 0.917, Initial F-measure: 0.957, Initial Energy: -16.16 New DP sens: 1.000, New DP ppv: 0.917, New DP F-measure: 0.957, New DP Energy: -16.16 ((((....))))..((((((...........)))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.47 ((((((.......)))))).......((.......)). New DP sens: 0.545, New DP ppv: 0.750, New DP F-measure: 0.632, New DP Energy: -11.34 (((((([[[{{{.)))))).......]]]....}}}.. New DP sens: 0.545, New DP ppv: 0.500, New DP F-measure: 0.522, New DP Energy: -11.33 ((((((.......)))))).......((((...)))). New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -11.20 ((((((..[[[..)))))).............]]]... New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -10.83 .(((..[[[)))..((((((......]]]..)))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.63 .(((...[[[[[[...)))............]]]]]]. New DP sens: 0.455, New DP ppv: 0.556, New DP F-measure: 0.500, New DP Energy: -10.54 ((((((...[[[.))))))..............]]].. New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -10.36 .......(((((((((..........)))..)))))). New DP sens: 0.455, New DP ppv: 0.556, New DP F-measure: 0.500, New DP Energy: -10.03 (((((([[[....)))))).......]]]......... New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -9.63 (((....[[[[[[..))).............]]]]]]. New DP sens: 0.455, New DP ppv: 0.556, New DP F-measure: 0.500, New DP Energy: -9.61 .((((..[[[[[[.............)))).]]]]]]. New DP sens: 0.455, New DP ppv: 0.500, New DP F-measure: 0.476, New DP Energy: -9.27 .(((.....)))..((((((...........)))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.40 .((((.........[[[[[[......)))).]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.26 (((.....)))...((((((...........)))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.24 ......(((.....[[[[[[......)))..]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.19 New DP F-measure-avg: 0.380, New DP F-measure-best: 0.957, New DP best-subopt: 0, New DP num-subopt: 16 > SSTRAND_ID=T2_gene32; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; CUGACCAGCUAUGAGGUCAUACAUCGUCAUAGC .[[[[[.(((((((]]]]].......))))))) .......(((((((.(........).))))))) .(((((.[[[[[[[))))).......]]]]]]] Energy of known structure: -8.69 Initial sens: 0.583, Initial ppv: 0.875, Initial F-measure: 0.700, Initial Energy: -6.42 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.69 .......(((((((.(........).))))))) New DP sens: 0.583, New DP ppv: 0.875, New DP F-measure: 0.700, New DP Energy: -6.42 .(((((........))))).............. New DP sens: 0.417, New DP ppv: 1.000, New DP F-measure: 0.588, New DP Energy: -4.00 New DP F-measure-avg: 0.763, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 2 > SSTRAND_ID=T4_gene32; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; UGCCAGCUAUGAGGUAAAGUGUCAUAGC [[[[.(((((((]]]].....))))))) .....(((((((.(.....).))))))) ((((.[[[[[[[)))).....]]]]]]] Energy of known structure: -6.55 Initial sens: 0.636, Initial ppv: 0.875, Initial F-measure: 0.737, Initial Energy: -3.53 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.55 .....(((((((.........))))))) New DP sens: 0.636, New DP ppv: 1.000, New DP F-measure: 0.778, New DP Energy: -5.48 ((((.[[[....)))).]]]........ New DP sens: 0.364, New DP ppv: 0.571, New DP F-measure: 0.444, New DP Energy: -2.15 New DP F-measure-avg: 0.741, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 2 > SSTRAND_ID=TMV.L; TYPE=viral RNA; EXT_SOURCE=van Belkum et al 1985; AUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGG ............[[[.((((]]].....))))[[[.((((((]]]...))))))[[[[.....(((((]]]]......).)))) ................(((((.((((...[[[[{{{{))))..<<<<.)))))..]]]]....((((}}}}....>>>>.)))) ..........((((((...))))))....((((...((((((.[[[[.)))))).))))....((((........]]]].)))) Energy of known structure: -12.63 Initial sens: 0.160, Initial ppv: 0.160, Initial F-measure: 0.160, Initial Energy: -10.81 New DP sens: 0.520, New DP ppv: 0.542, New DP F-measure: 0.531, New DP Energy: -13.47 ..........((((((...))))))....(((([[[[(((((......)))))..))))....((((]]]].........)))) New DP sens: 0.480, New DP ppv: 0.522, New DP F-measure: 0.500, New DP Energy: -12.78 ..........(((...((((........))))))).((((((.[[[[.))))))((((.....{{{{.))))...]]]].}}}} New DP sens: 0.720, New DP ppv: 0.720, New DP F-measure: 0.720, New DP Energy: -12.58 ..........((((((...))))))...........((((((.[[[[.))))))((((.....{{{{.))))...]]]].}}}} New DP sens: 0.680, New DP ppv: 0.708, New DP F-measure: 0.694, New DP Energy: -12.45 ..........((((((...))))))....((((...((((((.[[[[.)))))).)))).....(((........]]]]..))) New DP sens: 0.360, New DP ppv: 0.391, New DP F-measure: 0.375, New DP Energy: -12.17 ..........((((((...))))))....((((...((((((......)))))).))))....((((.(.........).)))) New DP sens: 0.520, New DP ppv: 0.619, New DP F-measure: 0.565, New DP Energy: -12.06 ................((((........))))....((((((.[[[[.))))))((((.....{{{{.))))...]]]].}}}} New DP sens: 0.720, New DP ppv: 0.818, New DP F-measure: 0.766, New DP Energy: -12.03 ..........(((...((((........))))))).((((((......))))))((((.....[[[[.))))........]]]] New DP sens: 0.720, New DP ppv: 0.857, New DP F-measure: 0.783, New DP Energy: -11.80 ..........((((((...))))))...........((((((......))))))((((.....[[[[.))))........]]]] New DP sens: 0.680, New DP ppv: 0.850, New DP F-measure: 0.756, New DP Energy: -11.67 ..........((((((...))))))........(((((((((......)))))..........[[[[)))).........]]]] New DP sens: 0.480, New DP ppv: 0.632, New DP F-measure: 0.545, New DP Energy: -11.50 ..........(((...((((........))))))).((((((.[[[[.))))))((((......{{{.))))...]]]]..}}} New DP sens: 0.560, New DP ppv: 0.583, New DP F-measure: 0.571, New DP Energy: -11.28 ................((((........))))....((((((......))))))((((.....[[[[.))))........]]]] New DP sens: 0.720, New DP ppv: 1.000, New DP F-measure: 0.837, New DP Energy: -11.25 ..........((((((...))))))...........((((((.[[[[.))))))((((......{{{.))))...]]]]..}}} New DP sens: 0.520, New DP ppv: 0.565, New DP F-measure: 0.542, New DP Energy: -11.15 ..........(((...((((........))))))).((((((.[[[[.)))))).........((((........]]]].)))) New DP sens: 0.560, New DP ppv: 0.667, New DP F-measure: 0.609, New DP Energy: -11.06 ..........((((((...))))))....(((([[[[(((((......)))))..)))).....(((]]]]..........))) New DP sens: 0.320, New DP ppv: 0.364, New DP F-measure: 0.340, New DP Energy: -11.03 ..........((((((...))))))....((((...((((((.[[[[.)))))).))))................]]]]..... New DP sens: 0.360, New DP ppv: 0.450, New DP F-measure: 0.400, New DP Energy: -10.98 ..........((((((...))))))....(((([[[[......{{{{........))))....((((]]]]....}}}}.)))) New DP sens: 0.280, New DP ppv: 0.318, New DP F-measure: 0.298, New DP Energy: -10.95 ..........((((((...))))))...........((((((.[[[[.)))))).........((((........]]]].)))) New DP sens: 0.520, New DP ppv: 0.650, New DP F-measure: 0.578, New DP Energy: -10.93 ................((((........)))).(((((((((......)))))..........[[[[)))).........]]]] New DP sens: 0.520, New DP ppv: 0.765, New DP F-measure: 0.619, New DP Energy: -10.89 ..........((((((...))))))....(((([[[[(((((......)))))..))))........]]]]......(....). New DP sens: 0.320, New DP ppv: 0.400, New DP F-measure: 0.356, New DP Energy: -10.82 New DP F-measure-avg: 0.569, New DP F-measure-best: 0.837, New DP best-subopt: 11, New DP num-subopt: 19 > SSTRAND_ID=Tt_LSU_P3P7; TYPE=ribozyme; EXT_SOURCE=van Batenburg et al 2001; AGACCGUCAAACACAGACUAAAUGUCGGUCGGGGAAGAUGUAUUCUUCUCAUAAGAUAUAGUCGG .(((((.((....[.[[[[[..)).))))).(((((((.....)))))))........]]]]]]. .(((((.((......[[[[[..)).))))).(((((((.....)))))))........]]]]].. .(((((.((......[[[[[..)).))))).(((((((.....)))))))........]]]]].. Energy of known structure: -14.19 Initial sens: 0.950, Initial ppv: 1.000, Initial F-measure: 0.974, Initial Energy: -15.29 New DP sens: 0.950, New DP ppv: 1.000, New DP F-measure: 0.974, New DP Energy: -15.29 .(((((.((.............)).))))).(((((((.....)))))))............... New DP sens: 0.700, New DP ppv: 1.000, New DP F-measure: 0.824, New DP Energy: -12.98 .(((((.((......[[[[[..)).)))))((((((......))))))..........]]]]].. New DP sens: 0.600, New DP ppv: 0.667, New DP F-measure: 0.632, New DP Energy: -12.72 .(((((.........[[[[[.....))))).(((((((.....)))))))........]]]]].. New DP sens: 0.850, New DP ppv: 1.000, New DP F-measure: 0.919, New DP Energy: -12.17 .(((((.((.............)).)))))(((((...[[[[[[.)))))....]]]]]]..... New DP sens: 0.350, New DP ppv: 0.389, New DP F-measure: 0.368, New DP Energy: -10.80 .(((((.((......[[[[[..)).)))))(((((..........)))))........]]]]].. New DP sens: 0.600, New DP ppv: 0.706, New DP F-measure: 0.649, New DP Energy: -10.50 .(((((.((.............)).)))))((((((......))))))................. New DP sens: 0.350, New DP ppv: 0.538, New DP F-measure: 0.424, New DP Energy: -10.47 .(((((......(((.......)))))))).(((((((.....)))))))............... New DP sens: 0.600, New DP ppv: 0.800, New DP F-measure: 0.686, New DP Energy: -10.23 ...............(((((...(((.....(((((((.....)))))))....))).))))).. New DP sens: 0.600, New DP ppv: 0.800, New DP F-measure: 0.686, New DP Energy: -9.79 .(((((.((......[[[[[..)).)))))(((((.......)))))...........]]]]].. New DP sens: 0.600, New DP ppv: 0.706, New DP F-measure: 0.649, New DP Energy: -9.79 .(((((.........[[[[[.....)))))((((((......))))))..........]]]]].. New DP sens: 0.500, New DP ppv: 0.625, New DP F-measure: 0.556, New DP Energy: -9.60 .(((((.((......[[[[[..)).))))).............((((.....))))..]]]]].. New DP sens: 0.600, New DP ppv: 0.750, New DP F-measure: 0.667, New DP Energy: -9.27 .....(((.......)))...(((((.....(((((((.....)))))))....)))))...... New DP sens: 0.350, New DP ppv: 0.467, New DP F-measure: 0.400, New DP Energy: -9.06 New DP F-measure-avg: 0.649, New DP F-measure-best: 0.974, New DP best-subopt: 0, New DP num-subopt: 12 > SSTRAND_ID=TYMV; TYPE=viral RNA; EXT_SOURCE=Deiman et al 1997; UUAGCUCGCCAGUUAGCGAGGUCUGUCCCCACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACCA ....(((((......)))))(((((((.......)))))))...((((.......))))[[[...((((((]]]...))))))... ....(((((......)))))(((((((.......)))))))....(((.((....[[[)))))..((((((]]]...))))))... ....(((((......)))))(((((((.......)))))))....(((.......)))((((...[[[[[[))))..]]]]]]... Energy of known structure: -20.75 Initial sens: 0.720, Initial ppv: 0.692, Initial F-measure: 0.706, Initial Energy: -20.28 New DP sens: 0.960, New DP ppv: 0.960, New DP F-measure: 0.960, New DP Energy: -20.01 ....(((((......))))).((((((.......))))))....((((.......)))).(((((....)))))............ New DP sens: 0.600, New DP ppv: 0.750, New DP F-measure: 0.667, New DP Energy: -19.67 ....(((((......)))))((((((([[[....)))))))....]]]..........((((...[[[[[[))))..]]]]]]... New DP sens: 0.840, New DP ppv: 0.840, New DP F-measure: 0.840, New DP Energy: -19.02 ....(((((......)))))(((((((.......)))))))....(((.((.......)))))..((((((......))))))... New DP sens: 0.720, New DP ppv: 0.783, New DP F-measure: 0.750, New DP Energy: -18.94 ....(((((......)))))(((((((.......)))))))...((((.......))))......((((((......))))))... New DP sens: 0.880, New DP ppv: 1.000, New DP F-measure: 0.936, New DP Energy: -18.85 ....(((((......)))))((((((([[[....)))))))....(((.((.......)))))..((((((]]]...))))))... New DP sens: 0.720, New DP ppv: 0.692, New DP F-measure: 0.706, New DP Energy: -18.84 ....(((((......)))))((((((([[[....)))))))....]]]......(((.(.(((((....))))).)...))).... New DP sens: 0.480, New DP ppv: 0.500, New DP F-measure: 0.490, New DP Energy: -18.67 ....(((((......)))))((((((([[[....)))))))...((((.......))))......((((((]]]...))))))... New DP sens: 0.880, New DP ppv: 0.880, New DP F-measure: 0.880, New DP Energy: -18.57 ....(((((......)))))(((((((.......)))))))....(((.......[[[..)))..((((((]]]...))))))... New DP sens: 0.720, New DP ppv: 0.750, New DP F-measure: 0.735, New DP Energy: -18.54 ....(((((......)))))(((((((.......)))))))....(((((.......)))))...((((((......))))))... New DP sens: 0.720, New DP ppv: 0.783, New DP F-measure: 0.750, New DP Energy: -18.29 ....(((((......)))))((((((([[[....)))))))....]]].......(((.......[[[[[[)))...]]]]]]... New DP sens: 0.720, New DP ppv: 0.750, New DP F-measure: 0.735, New DP Energy: -18.19 ....(((((......)))))((((((([[[....)))))))....(((((.......)))))...((((((]]]...))))))... New DP sens: 0.720, New DP ppv: 0.692, New DP F-measure: 0.706, New DP Energy: -18.13 ....(((((......)))))((((((([[[....)))))))....]]]............(((((....)))))............ New DP sens: 0.480, New DP ppv: 0.600, New DP F-measure: 0.533, New DP Energy: -17.07 ....(((((......)))))(((((((.......)))))))....(((............)))..((((((......))))))... New DP sens: 0.720, New DP ppv: 0.857, New DP F-measure: 0.783, New DP Energy: -17.00 ....(((((......)))))((((((([[[....)))))))....(((............)))..((((((]]]...))))))... New DP sens: 0.720, New DP ppv: 0.750, New DP F-measure: 0.735, New DP Energy: -16.90 ((((((....)))))).((((((((((.......))))))....((((.......))))..))))((((((......))))))... New DP sens: 0.640, New DP ppv: 0.615, New DP F-measure: 0.627, New DP Energy: -16.86 ....(((((......)))))(((((((.......)))))))..............(((.......[[[[[[)))...]]]]]]... New DP sens: 0.720, New DP ppv: 0.857, New DP F-measure: 0.783, New DP Energy: -16.35 ....(((((......)))))((((((([[[....)))))))....]]].((.......)).....((((((......))))))... New DP sens: 0.720, New DP ppv: 0.783, New DP F-measure: 0.750, New DP Energy: -16.30 ......((((......(((.(((((((.......)))))))..)))))))........((((...[[[[[[))))..]]]]]]... New DP sens: 0.640, New DP ppv: 0.667, New DP F-measure: 0.653, New DP Energy: -16.02 ((((((....)))))).(((((((((([[[....))))))....((((.......))))..))))((((((]]]...))))))... New DP sens: 0.640, New DP ppv: 0.552, New DP F-measure: 0.593, New DP Energy: -15.95 New DP F-measure-avg: 0.731, New DP F-measure-best: 0.960, New DP best-subopt: 0, New DP num-subopt: 19 > AKV-MuLV GGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCACUGUCGGGGGGC ((((((((.[[[[[[[)))).))))..................]]]]]]] ((((.....))))((((((((....(((.....))).....)))))))). ((((((((.[[[[[[[)))).))))(((.....))).......]]]]]]] Energy of known structure: -16.10 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -13.18 New DP sens: 1.000, New DP ppv: 0.833, New DP F-measure: 0.909, New DP Energy: -15.66 ((((.....[[[[[[[((((....))))...))))........]]]]]]] New DP sens: 0.467, New DP ppv: 0.467, New DP F-measure: 0.467, New DP Energy: -15.43 ...(((((.[[[[[[[)))))...(((((......)).)))..]]]]]]] New DP sens: 0.733, New DP ppv: 0.647, New DP F-measure: 0.688, New DP Energy: -13.99 ((((((((........)))).)))).......(((((......))))).. New DP sens: 0.533, New DP ppv: 0.615, New DP F-measure: 0.571, New DP Energy: -13.45 ((((.....))))((((((((....(((.....))).....)))))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.18 (((.......)))((((((((...(((((......)).))))))))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.16 ((((((((........)))).)))).......(((((.......))))). New DP sens: 0.533, New DP ppv: 0.615, New DP F-measure: 0.571, New DP Energy: -12.81 ((((((((..[[[[[.)))).))))(((.....))).......]]]]].. New DP sens: 0.533, New DP ppv: 0.500, New DP F-measure: 0.516, New DP Energy: -12.64 ((((.........[[[[[[[[..........))))......]]]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.31 .........(((((((((((....))))...............))))))) New DP sens: 0.467, New DP ppv: 0.636, New DP F-measure: 0.538, New DP Energy: -12.22 ((((.....[[[[[[[.....))))(((.....))).......]]]]]]] New DP sens: 0.733, New DP ppv: 0.786, New DP F-measure: 0.759, New DP Energy: -12.08 ((((((((........)))).)))).......((((.......))))... New DP sens: 0.533, New DP ppv: 0.667, New DP F-measure: 0.593, New DP Energy: -12.02 ((((.......[[[[[[(((....)))....))))........]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.88 ((((.........[[[[[[[[))))(((.....))).....]]]]]]]]. New DP sens: 0.267, New DP ppv: 0.267, New DP F-measure: 0.267, New DP Energy: -11.88 (((.(....).)))..((((....))))....(((((......))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.36 ((([[[[[.....)))]]]]]...........(((((......))))).. New DP sens: 0.267, New DP ppv: 0.308, New DP F-measure: 0.286, New DP Energy: -11.16 ((((.....))))...((((....))))....(((((......))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.15 ...(((((..[[[[[.)))))...(((((......)).)))..]]]]].. New DP sens: 0.267, New DP ppv: 0.267, New DP F-measure: 0.267, New DP Energy: -10.97 ((((........[[[[[[.............))))........]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.75 (((.(....).)))..((((....))))....(((((.......))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.72 New DP F-measure-avg: 0.322, New DP F-measure-best: 0.909, New DP best-subopt: 0, New DP num-subopt: 19 > BaEV GGGCUCUGGAGCCCCCCCCGAGCCCCGGCUAACUCUAUCUGUAGGGGGGC ((((((.((.[[[[[[[))))))))..................]]]]]]] (((((....)))))(((((.(((....))).((.......)).))))).. ((((((...[[[[{{{{{{)))))).]]]].............}}}}}}. Energy of known structure: -16.44 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -12.75 New DP sens: 0.400, New DP ppv: 0.375, New DP F-measure: 0.387, New DP Energy: -16.43 (((((([[[[[..{{{{{{)))))).......]]]]]......}}}}}}. New DP sens: 0.400, New DP ppv: 0.353, New DP F-measure: 0.375, New DP Energy: -15.93 (((((([[[[[.{{{{{{.)))))).......]]]]]......}}}}}}. New DP sens: 0.400, New DP ppv: 0.353, New DP F-measure: 0.375, New DP Energy: -15.76 ((((((....[[[[[[[..))))))..................]]]]]]] New DP sens: 0.867, New DP ppv: 1.000, New DP F-measure: 0.929, New DP Energy: -15.49 ((((((...[[[[.{{{{{)))))).]]]]..............}}}}}. New DP sens: 0.400, New DP ppv: 0.400, New DP F-measure: 0.400, New DP Energy: -14.39 (((((([[[[[{{{{{...)))))).......]]]]]......}}}}}.. New DP sens: 0.400, New DP ppv: 0.375, New DP F-measure: 0.387, New DP Energy: -14.35 (((((....))))).......(((((..(((..........))).))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.07 (((((([[[[[...{{{{{)))))).......]]]]].......}}}}}. New DP sens: 0.400, New DP ppv: 0.375, New DP F-measure: 0.387, New DP Energy: -13.88 ((((((......[[[[[[.))))))..................]]]]]]. New DP sens: 0.400, New DP ppv: 0.500, New DP F-measure: 0.444, New DP Energy: -13.73 ((((((.......[[[[[[))))))..................]]]]]]. New DP sens: 0.400, New DP ppv: 0.500, New DP F-measure: 0.444, New DP Energy: -13.73 ((((((.((.......)).))))))..(((..(((((....))))).))) New DP sens: 0.400, New DP ppv: 0.375, New DP F-measure: 0.387, New DP Energy: -12.77 ((((((...[[[[..{{{{)))))).]]]]...............}}}}. New DP sens: 0.400, New DP ppv: 0.429, New DP F-measure: 0.414, New DP Energy: -12.52 (((((([[[[[{{{{....)))))).......]]]]]......}}}}... New DP sens: 0.400, New DP ppv: 0.400, New DP F-measure: 0.400, New DP Energy: -12.37 ((((([[[[)))))(((((.....]]]]................))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.23 ((((((.....[[[[[...))))))..................]]]]].. New DP sens: 0.400, New DP ppv: 0.545, New DP F-measure: 0.462, New DP Energy: -12.15 .((((.[[[[[..{{{{{{.......))))..]]]]]......}}}}}}. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.86 (((((([[[[[....{{{{)))))).......]]]]]........}}}}. New DP sens: 0.400, New DP ppv: 0.400, New DP F-measure: 0.400, New DP Energy: -11.84 ((((((...[[[[......)))))).]]]]..((((.......))))... New DP sens: 0.400, New DP ppv: 0.429, New DP F-measure: 0.414, New DP Energy: -11.80 .((((.[[[[[.{{{{{{........))))..]]]]]......}}}}}}. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.69 ((((((........[[[[[))))))...................]]]]]. New DP sens: 0.400, New DP ppv: 0.545, New DP F-measure: 0.462, New DP Energy: -11.68 New DP F-measure-avg: 0.353, New DP F-measure-best: 0.929, New DP best-subopt: 3, New DP num-subopt: 19 > BLV GGGGGGACUUAGCGCCCCCCAAACCGU ((((((.....[[[))))))....]]] ((((((........))))))....... ((((((........))))))....... Energy of known structure: -8.65 Initial sens: 0.667, Initial ppv: 1.000, Initial F-measure: 0.800, Initial Energy: -9.98 New DP sens: 0.667, New DP ppv: 1.000, New DP F-measure: 0.800, New DP Energy: -9.98 ((((((.....[[[))))))....]]] New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.65 .(((((.........)))))....... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.21 .(((((.....[[[.)))))....]]] New DP sens: 0.333, New DP ppv: 0.375, New DP F-measure: 0.353, New DP Energy: -6.80 (((((.........)))))........ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.39 New DP F-measure-avg: 0.431, New DP F-measure-best: 1.000, New DP best-subopt: 1, New DP num-subopt: 4 > Bp_PK2 CCGCUGCACUGAUCUGUCCUUGGGUCAGGCGGGGGAAGGCAACUUCCCAGGGGGCAACCCCGAACCGCAGCAGCGACAUUCACAAGGAAU .((((((..(((....[[[[[[..))).((((((((((....)))))).((((....))))...)))).)))))).......]]]]]].. .((((((.(((((((......)))))))((((((((((....)))))).((((....))))...)))).))))))............... .((((((.((((((((....))))))))((((((((((....)))))).((((....))))...)))).))))))............... Energy of known structure: -26.02 Initial sens: 0.793, Initial ppv: 0.852, Initial F-measure: 0.821, Initial Energy: -29.53 New DP sens: 0.793, New DP ppv: 0.821, New DP F-measure: 0.807, New DP Energy: -30.15 .((((((.((((((((....))))))))....((((((....)))))).((((....))))........))))))............... New DP sens: 0.655, New DP ppv: 0.792, New DP F-measure: 0.717, New DP Energy: -28.04 .((((((.((((((((....))))))))((((((((((....))))))..((((...))))...)))).))))))............... New DP sens: 0.655, New DP ppv: 0.679, New DP F-measure: 0.667, New DP Energy: -27.33 ..(((((.((((((((....))))))))....((((((....)))))).((((....)))).....)))))................... New DP sens: 0.448, New DP ppv: 0.565, New DP F-measure: 0.500, New DP Energy: -26.88 .((((((.........[[[[[[......((((((((((....)))))).((((....))))...)))).)))))).......]]]]]].. New DP sens: 0.897, New DP ppv: 1.000, New DP F-measure: 0.945, New DP Energy: -26.22 ...((((.((((((((....))))))))))))((((((....)))))).((((....))))....(((....)))............... New DP sens: 0.448, New DP ppv: 0.520, New DP F-measure: 0.481, New DP Energy: -25.74 .((((((.((((((((....))))))))....((((((....))))))..((((...))))........))))))............... New DP sens: 0.517, New DP ppv: 0.625, New DP F-measure: 0.566, New DP Energy: -25.22 ...((((.((((((((....))))))))))))((((((....)))))).((((....))))(((.(((....)))...)))......... New DP sens: 0.448, New DP ppv: 0.464, New DP F-measure: 0.456, New DP Energy: -24.89 New DP F-measure-avg: 0.642, New DP F-measure-best: 0.945, New DP best-subopt: 4, New DP num-subopt: 7 > BVDV_IRES GGGUAGCAACAGUGGUGAACAGCCUGAUAGGGUGCUGCAGAGGCCCACUGUAUUGCUACUAAAAAUCUCUGCU .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).....]]]]]]]. .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).....]]]]]]]. .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).....]]]]]]]. Energy of known structure: -20.66 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -20.66 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -20.66 .((((((((..((((((....((((....))))...[[[[[[[..)))))).)))))))).....]]]]]]]. New DP sens: 0.720, New DP ppv: 0.720, New DP F-measure: 0.720, New DP Energy: -17.78 .((((((((((((((((....((((....))))....)).....)))))))..)))))))............. New DP sens: 0.720, New DP ppv: 0.900, New DP F-measure: 0.800, New DP Energy: -16.32 .((((((((((((((((....((((....))))....)).....))))))..))))))))............. New DP sens: 0.680, New DP ppv: 0.850, New DP F-measure: 0.756, New DP Energy: -16.21 .((((((((((((((......((((....))))(((.....))))))))))..)))))))............. New DP sens: 0.720, New DP ppv: 0.857, New DP F-measure: 0.783, New DP Energy: -15.75 .((((((((((((((....((((((....))..)))).......)))))))..)))))))............. New DP sens: 0.640, New DP ppv: 0.800, New DP F-measure: 0.711, New DP Energy: -15.75 .((((((((((((((......((((...............)))))))))))..)))))))............. New DP sens: 0.560, New DP ppv: 0.778, New DP F-measure: 0.651, New DP Energy: -15.17 .((((((((............((((....))))...[[[[[[[.........)))))))).....]]]]]]]. New DP sens: 0.720, New DP ppv: 0.947, New DP F-measure: 0.818, New DP Energy: -14.40 .((((((((....(((.....)))......((((..[[[[[[[..))))...)))))))).....]]]]]]]. New DP sens: 0.560, New DP ppv: 0.636, New DP F-measure: 0.596, New DP Energy: -13.07 New DP F-measure-avg: 0.759, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 8 > BYDV-NY-RPV GGCGGCGGCGUCCGCCGUAACAAACGC (((((..[[[[))))).......]]]] .(((((((...)))))))......... (((((..[[[[))))).......]]]] Energy of known structure: -8.60 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -7.22 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.60 .(((((((...)))))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.22 (((((......)))))........... New DP sens: 0.556, New DP ppv: 1.000, New DP F-measure: 0.714, New DP Energy: -5.81 .((((((((....)))))......))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.17 ....(((((....)))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.46 New DP F-measure-avg: 0.343, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 4 > Cas-Br-E-MuLv GGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGC ((((((((.[[[[[[[)))).))))..................]]]]]]] ((((.....))))((((((((....(((.....))).....)))))))). ((((((((.[[[[[[[)))).))))(((.....))).......]]]]]]] Energy of known structure: -16.10 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -13.18 New DP sens: 1.000, New DP ppv: 0.833, New DP F-measure: 0.909, New DP Energy: -15.66 ((((.....[[[[[[[((((....))))...))))........]]]]]]] New DP sens: 0.467, New DP ppv: 0.467, New DP F-measure: 0.467, New DP Energy: -15.43 ((((((((........)))).)))).......(((((......))))).. New DP sens: 0.533, New DP ppv: 0.615, New DP F-measure: 0.571, New DP Energy: -13.45 (((.......)))((((((((....(((.....))).....)))))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.18 ((((((((........)))).)))).......(((((.......))))). New DP sens: 0.533, New DP ppv: 0.615, New DP F-measure: 0.571, New DP Energy: -12.81 ...(((((.[[[[[[[)))))....(((.....))).......]]]]]]] New DP sens: 0.733, New DP ppv: 0.733, New DP F-measure: 0.733, New DP Energy: -12.79 ((((((((..[[[[[.)))).))))(((.....))).......]]]]].. New DP sens: 0.533, New DP ppv: 0.500, New DP F-measure: 0.516, New DP Energy: -12.64 ((((.........[[[[[[[[..........))))......]]]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.31 .........(((((((((((....))))...............))))))) New DP sens: 0.467, New DP ppv: 0.636, New DP F-measure: 0.538, New DP Energy: -12.22 ((((.....[[[[[[[.....))))(((.....))).......]]]]]]] New DP sens: 0.733, New DP ppv: 0.786, New DP F-measure: 0.759, New DP Energy: -12.08 ((((((((........)))).)))).......((((.......))))... New DP sens: 0.533, New DP ppv: 0.667, New DP F-measure: 0.593, New DP Energy: -12.02 ((((.........[[[[[[[[))))(((.....))).....]]]]]]]]. New DP sens: 0.267, New DP ppv: 0.267, New DP F-measure: 0.267, New DP Energy: -11.88 (((.(....).)))..((((....))))....(((((......))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.36 ((([[[[[.....)))]]]]]...........(((((......))))).. New DP sens: 0.267, New DP ppv: 0.308, New DP F-measure: 0.286, New DP Energy: -11.16 ((((.....))))...((((....))))....(((((......))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -11.15 ((((........[[[[[[.............))))........]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.75 (((.(....).)))..((((....))))....(((((.......))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.72 ((((((((........)))).))))........((((........)))). New DP sens: 0.533, New DP ppv: 0.667, New DP F-measure: 0.593, New DP Energy: -10.67 ((((((((..[[[[..)))).))))(((.....))).......]]]]... New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -10.66 ((([[[[[.....)))]]]]]...........(((((.......))))). New DP sens: 0.267, New DP ppv: 0.308, New DP F-measure: 0.286, New DP Energy: -10.52 New DP F-measure-avg: 0.381, New DP F-measure-best: 0.909, New DP best-subopt: 0, New DP num-subopt: 19 > CoxB3 ACCCUACUGUGCUAACCGAACCAGAUAACGGUACAGUAGGGGUAAAUUCUCCGCAUUCGGUGCGGAAAAAAAA .((((((((((((.[[[[[[.........)))))))))))).....((.(((((.]]]]]]))))).)).... .((((((((((((................))))))))))))........(((((((...)))))))....... .((((((((((((................))))))))))))........(((((((...)))))))....... Energy of known structure: -19.70 Initial sens: 0.680, Initial ppv: 0.895, Initial F-measure: 0.773, Initial Energy: -18.06 New DP sens: 0.680, New DP ppv: 0.895, New DP F-measure: 0.773, New DP Energy: -18.06 .((((((((((((.[[[[[[.........)))))))))))).....((((.....]]]]]]..))))...... New DP sens: 0.720, New DP ppv: 0.818, New DP F-measure: 0.766, New DP Energy: -17.49 .((((((((((((.[[[[[[.........))))))))))))..............]]]]]]............ New DP sens: 0.720, New DP ppv: 1.000, New DP F-measure: 0.837, New DP Energy: -16.50 (((((((((((((................)))))))).)))))......(((((((...)))))))....... New DP sens: 0.520, New DP ppv: 0.650, New DP F-measure: 0.578, New DP Energy: -14.84 .((((((((((((................)))))))))))).....(((((((....)))...))))...... New DP sens: 0.480, New DP ppv: 0.632, New DP F-measure: 0.545, New DP Energy: -14.57 New DP F-measure-avg: 0.700, New DP F-measure-best: 0.837, New DP best-subopt: 2, New DP num-subopt: 4 > CSFV_IRES GACUAGCCGUAGUGGCGAACGACCUGAUAGGGUGCUGCAGAGGCCCACUAUUAGGCUAGUAUAAAAAUCUCUGCUG .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).......]]]]]]].. .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).......]]]]]]].. .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).......]]]]]]].. Energy of known structure: -20.14 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -20.14 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -20.14 .((((((((((((((......((((....))))(((.....))))))))))..)))))))................ New DP sens: 0.720, New DP ppv: 0.857, New DP F-measure: 0.783, New DP Energy: -15.35 ........(((((((......((((....))))[[[{{{{{{{.)))))))..]]]...........}}}}}}}.. New DP sens: 0.720, New DP ppv: 0.857, New DP F-measure: 0.783, New DP Energy: -14.13 .....(((...((((((.....[[[[[[[[..))))))...)))...]]]]]]]]..((((..........)))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.97 .....(((.....)))......((((((((......[[[[[[[....))))))))............]]]]]]].. New DP sens: 0.280, New DP ppv: 0.389, New DP F-measure: 0.326, New DP Energy: -13.69 .(((((((.............((((....))))...[[[[[[[..........))))))).......]]]]]]].. New DP sens: 0.720, New DP ppv: 1.000, New DP F-measure: 0.837, New DP Energy: -13.69 .((((((((((((((............[[[[[.(((.....))))))))))..)))))))........]]]]]... New DP sens: 0.560, New DP ppv: 0.636, New DP F-measure: 0.596, New DP Energy: -13.14 .....(((.....)))......((((((((((.(((.....))))).))))))))..((((..........)))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.74 .....(((...(((((.....((((....)))))))))...))).........(((.((...........))))). New DP sens: 0.160, New DP ppv: 0.235, New DP F-measure: 0.190, New DP Energy: -12.73 ........(((((((......((((....))))...[[[[[[[.)))))))................]]]]]]].. New DP sens: 0.720, New DP ppv: 1.000, New DP F-measure: 0.837, New DP Energy: -12.68 .....(((.....))).....((((....))))...(((((((((........)))............)))))).. New DP sens: 0.400, New DP ppv: 0.625, New DP F-measure: 0.488, New DP Energy: -12.65 .....((((...)))).....((((....))))((([[[[[[[..........)))...........]]]]]]].. New DP sens: 0.440, New DP ppv: 0.611, New DP F-measure: 0.512, New DP Energy: -12.59 .(((((((.....((.......)).....((((.........)))).......)))))))................ New DP sens: 0.280, New DP ppv: 0.538, New DP F-measure: 0.368, New DP Energy: -12.14 .(((((((.....((.......))......((((..[[[[[[[..))))....))))))).......]]]]]]].. New DP sens: 0.560, New DP ppv: 0.700, New DP F-measure: 0.622, New DP Energy: -12.11 .....(((...((((((.....(((....)))))))))...))).........(((.((...........))))). New DP sens: 0.120, New DP ppv: 0.176, New DP F-measure: 0.143, New DP Energy: -11.98 .(((((((.[[[[[[..........(((((((.(((.....))))).))))).)))))))..........]]]]]] New DP sens: 0.280, New DP ppv: 0.304, New DP F-measure: 0.292, New DP Energy: -11.86 .....(((.....))).....((((....))))...(((((((...((((......)))).......))))))).. New DP sens: 0.440, New DP ppv: 0.611, New DP F-measure: 0.512, New DP Energy: -11.43 New DP F-measure-avg: 0.488, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 16 > EIAV GGGGCUCAAGGGAGGCCCCAGAAACAAACUUUCCC ((((((...[[[[))))))............]]]] (((((((....)).)))))................ ((((((.......))))))................ Energy of known structure: -11.02 Initial sens: 0.500, Initial ppv: 0.714, Initial F-measure: 0.588, Initial Energy: -6.80 New DP sens: 0.600, New DP ppv: 1.000, New DP F-measure: 0.750, New DP Energy: -8.04 .(((.....[[[[[[.)))..........]]]]]] New DP sens: 0.400, New DP ppv: 0.444, New DP F-measure: 0.421, New DP Energy: -6.50 .(((.....[[[[[[.))).........]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.97 (((......[[[[[[)))...........]]]]]] New DP sens: 0.400, New DP ppv: 0.444, New DP F-measure: 0.421, New DP Energy: -5.68 (((.(((....))).)))................. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.37 (((......[[[[[[)))..........]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.15 .(((.....[[[[[..))).........]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.40 New DP F-measure-avg: 0.227, New DP F-measure-best: 0.750, New DP best-subopt: 0, New DP num-subopt: 6 > FeLV GGGCCAGGACCCCCCCCCCUGAGCCCAGGAUAACCUUAAGAAUAGGGGGG ((((((((...[[[[[[)))).))))..................]]]]]] (((......))).((((((((..(..(((....)))...)..)))))))) ((((((((...[[[[[[)))).))))(((....)))........]]]]]] Energy of known structure: -15.66 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -11.98 New DP sens: 1.000, New DP ppv: 0.824, New DP F-measure: 0.903, New DP Energy: -15.20 ((((((((..[[[[[[.)))).))))(((....)))........]]]]]] New DP sens: 0.571, New DP ppv: 0.471, New DP F-measure: 0.516, New DP Energy: -15.20 ((((((((.[[[[[[..)))).))))(((....)))........]]]]]] New DP sens: 0.571, New DP ppv: 0.471, New DP F-measure: 0.516, New DP Energy: -15.03 ((((((((.[[[[[...)))).))))(((....)))........]]]]]. New DP sens: 0.571, New DP ppv: 0.500, New DP F-measure: 0.533, New DP Energy: -14.00 (((......))).(((((((...(..(((....)))...)...))))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.40 ((((.........[[[[[[[[.))))(((....)))......]]]]]]]] New DP sens: 0.286, New DP ppv: 0.267, New DP F-measure: 0.276, New DP Energy: -12.34 ((((((((.........)))).)))).......((((.......)))).. New DP sens: 0.571, New DP ppv: 0.667, New DP F-measure: 0.615, New DP Energy: -12.17 ((((((((.........)))).)))).......(((((....)))))... New DP sens: 0.571, New DP ppv: 0.615, New DP F-measure: 0.593, New DP Energy: -12.13 (((......))).((((((((.....(((....)))......)))))))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.09 ((((((((.[[[[....)))).))))(((....)))........]]]].. New DP sens: 0.571, New DP ppv: 0.533, New DP F-measure: 0.552, New DP Energy: -12.02 ((((((((.........)))).)))).......((((........)))). New DP sens: 0.571, New DP ppv: 0.667, New DP F-measure: 0.615, New DP Energy: -11.33 ((((........[[[[[[....))))(((....)))........]]]]]] New DP sens: 0.286, New DP ppv: 0.308, New DP F-measure: 0.296, New DP Energy: -10.62 ((((.......[[[[[[.....))))(((....)))........]]]]]] New DP sens: 0.714, New DP ppv: 0.769, New DP F-measure: 0.741, New DP Energy: -10.62 ((((......[[[[[[......))))(((....)))........]]]]]] New DP sens: 0.286, New DP ppv: 0.308, New DP F-measure: 0.296, New DP Energy: -10.62 (((.[[[[.{{{{{)))]]]].....(((....)))........}}}}}. New DP sens: 0.286, New DP ppv: 0.267, New DP F-measure: 0.276, New DP Energy: -10.54 ((((.....[[[[[[.......))))(((....)))........]]]]]] New DP sens: 0.286, New DP ppv: 0.308, New DP F-measure: 0.296, New DP Energy: -10.54 ....((((...[[[[[[)))).....(((....)))........]]]]]] New DP sens: 0.714, New DP ppv: 0.769, New DP F-measure: 0.741, New DP Energy: -10.41 ....((((..[[[[[[.)))).....(((....)))........]]]]]] New DP sens: 0.286, New DP ppv: 0.308, New DP F-measure: 0.296, New DP Energy: -10.41 ((((((((.........)))).)))).......((((.........)))) New DP sens: 0.571, New DP ppv: 0.667, New DP F-measure: 0.615, New DP Energy: -10.26 ....((((.[[[[[[..)))).....(((....)))........]]]]]] New DP sens: 0.286, New DP ppv: 0.308, New DP F-measure: 0.296, New DP Energy: -10.24 New DP F-measure-avg: 0.449, New DP F-measure-best: 0.903, New DP best-subopt: 0, New DP num-subopt: 19 > FIV GGGGCGAGCUGCAGCCCCAGUGAAUCAAAUGCAGC [[[[[..((((((]]]]]...........)))))) (((((..[[[[[[)))))...........]]]]]] (((((..[[[[[[)))))...........]]]]]] Energy of known structure: -12.43 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -12.43 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -12.43 .(((...[[[[[[..)))...........]]]]]] New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -8.53 (((....[[[[[[.)))............]]]]]] New DP sens: 0.545, New DP ppv: 0.667, New DP F-measure: 0.600, New DP Energy: -7.71 (((((........)))))..((.........)).. New DP sens: 0.455, New DP ppv: 0.714, New DP F-measure: 0.556, New DP Energy: -7.62 (((((........))))).(((.......)))... New DP sens: 0.455, New DP ppv: 0.625, New DP F-measure: 0.526, New DP Energy: -7.36 .......((((((................)))))) New DP sens: 0.545, New DP ppv: 1.000, New DP F-measure: 0.706, New DP Energy: -6.07 New DP F-measure-avg: 0.665, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 5 > HCV_229E CGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGUAACAGUUAUGGACCACGAGCAGUCCAUG ((((((((((((...[[[[[)))))))))))).......(((((((..]]]]].))))))) ((((((((((((...[[[[[)))))))))))).......(((((((..]]]]].))))))) ((((((((((((...[[[[[)))))))))))).......(((((((..]]]]].))))))) Energy of known structure: -20.85 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -20.85 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -20.85 ((((((((((((........))))))))))))........((((((........)))))). New DP sens: 0.750, New DP ppv: 1.000, New DP F-measure: 0.857, New DP Energy: -19.51 ((((((((((((...[[[[[))))))))))))................]]]]]........ New DP sens: 0.708, New DP ppv: 1.000, New DP F-measure: 0.829, New DP Energy: -17.78 New DP F-measure-avg: 0.895, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 2 > HCV_Ires CCUCCCGGGAGAACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG (((((((((......(((......)))((.[[[[[[.))))))))))).]]]]]]. (((((((((.(.(((((((....)))).......))).))))))))))........ (((((((((.....(((((....))))).[[[[[[[...))))))))).]]]]]]] Energy of known structure: -14.63 Initial sens: 0.600, Initial ppv: 0.706, Initial F-measure: 0.649, Initial Energy: -16.09 New DP sens: 0.900, New DP ppv: 0.857, New DP F-measure: 0.878, New DP Energy: -17.34 (((((((((.(.(((((((....)))).......))).))))))))))........ New DP sens: 0.600, New DP ppv: 0.706, New DP F-measure: 0.649, New DP Energy: -16.09 (((((((((......((((....))))(((....)))..)))))))))........ New DP sens: 0.600, New DP ppv: 0.750, New DP F-measure: 0.667, New DP Energy: -15.47 (((((((((.......(((...)))(((((....))))))))))))))........ New DP sens: 0.450, New DP ppv: 0.529, New DP F-measure: 0.486, New DP Energy: -14.26 (((((((((.....(((((....)))))...........)))))))))........ New DP sens: 0.600, New DP ppv: 0.857, New DP F-measure: 0.706, New DP Energy: -13.92 (((((((((.......(((...)))....[[[[[[[...))))))))).]]]]]]] New DP sens: 0.750, New DP ppv: 0.789, New DP F-measure: 0.769, New DP Energy: -13.71 ........((((.((.((((...(((((((....))))))))))))).)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.56 ........((((....((((...(((((((....)))))))))))...)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.48 .....(((((...((.((((...(((((((....))))))))))))).)))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -13.01 (((((((((.(.....(((...)))..(((....))).))))))))))........ New DP sens: 0.450, New DP ppv: 0.562, New DP F-measure: 0.500, New DP Energy: -12.76 .....(((((......((((...(((((((....)))))))))))...)))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.49 .(((....)))....((((....(((((((....)))))))[[[[))))]]]]... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -12.32 New DP F-measure-avg: 0.388, New DP F-measure-best: 0.878, New DP best-subopt: 0, New DP num-subopt: 11 > HDV-It_g UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACAUUCCGAGGGGACCGUCCCCUCGGUAAUGGCGAAUGGGACCCA .(((((((..[[[[[[[(((.[[.....))))))))))]]....(((((((((((((...))))))))).)))).....]]]]]]].. ((.(((((.((((.(((((......))))).))))))))).)).((((((((((((.....)))))))).)))).............. ((((((((..[[[[[[[(((........))))))))))).((..(((((((((((((...))))))))).))))))...]]]]]]].. Energy of known structure: -28.96 Initial sens: 0.375, Initial ppv: 0.429, Initial F-measure: 0.400, Initial Energy: -26.97 New DP sens: 0.938, New DP ppv: 0.909, New DP F-measure: 0.923, New DP Energy: -30.98 ((((((((..[[[[[[[(((........))))))))))).....(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.938, New DP ppv: 0.968, New DP F-measure: 0.952, New DP Energy: -30.04 ((.(((((.((((.(((((......))))).))))))))).)).(((((((((((((...))))))))).)))).............. New DP sens: 0.406, New DP ppv: 0.448, New DP F-measure: 0.426, New DP Energy: -28.41 ((((((((..[[[[[[[......[[[[[[..))))))))(....)...(((((((((...)))))))))...]]]]]].]]]]]]].. New DP sens: 0.719, New DP ppv: 0.742, New DP F-measure: 0.730, New DP Energy: -28.29 ..((((((.....[[[[[[[.....))))))...]]]]]]]...(((((((((((((...))))))))).)))).............. New DP sens: 0.406, New DP ppv: 0.500, New DP F-measure: 0.448, New DP Energy: -28.18 ..((((((..[[[[[[[[[[[....)))))).......]]]]..(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.625, New DP ppv: 0.667, New DP F-measure: 0.645, New DP Energy: -28.02 ((((((((......(((((......))))).)))))))).((..(((((((((((((...))))))))).))))))............ New DP sens: 0.625, New DP ppv: 0.714, New DP F-measure: 0.667, New DP Energy: -28.00 ((((((((......(((((......))))).)))))))).....(((((((((((((...))))))))).)))).............. New DP sens: 0.625, New DP ppv: 0.769, New DP F-measure: 0.690, New DP Energy: -27.42 ((.(((((.((((.(((((......))))).))))))))).)).....(((((((((...)))))))))...(((..........))) New DP sens: 0.281, New DP ppv: 0.321, New DP F-measure: 0.300, New DP Energy: -26.58 ...(((((..(((.(((((......))))).))).)))))....(((((((((((((...))))))))).)))).............. New DP sens: 0.406, New DP ppv: 0.500, New DP F-measure: 0.448, New DP Energy: -26.45 ..((((((.....[[[[[[[.....))))))...]]]]]]].......(((((((((...)))))))))...(((..........))) New DP sens: 0.281, New DP ppv: 0.360, New DP F-measure: 0.316, New DP Energy: -26.26 ...(((((..(((.(((((......))))).))).)))))((..(((((((((((((...))))))))).))))))............ New DP sens: 0.406, New DP ppv: 0.464, New DP F-measure: 0.433, New DP Energy: -26.08 ..((((((..[[[[[[[........))))))(((.....)))..(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.625, New DP ppv: 0.690, New DP F-measure: 0.656, New DP Energy: -26.06 ...(((((..[[[[[[[(((........)))....)))))....(((((((((((((...))))))))).)))).....]]]]]]].. New DP sens: 0.719, New DP ppv: 0.821, New DP F-measure: 0.767, New DP Energy: -26.01 ...(((((..[[[[[[[(((........)))....)))))((..(((((((((((((...))))))))).))))))...]]]]]]].. New DP sens: 0.719, New DP ppv: 0.767, New DP F-measure: 0.742, New DP Energy: -26.00 ((((((((..[[[[[[[(((........)))))))))))(....)...(((((((((...)))))))))..........]]]]]]].. New DP sens: 0.812, New DP ppv: 0.929, New DP F-measure: 0.867, New DP Energy: -25.92 ..........(((((((((((((..((....)).))..))))..(((((((((((((...))))))))).)))).....))))))).. New DP sens: 0.625, New DP ppv: 0.714, New DP F-measure: 0.667, New DP Energy: -25.61 ..........(((((((((((....((((....)))).))))..(((((((((((((...))))))))).)))).....))))))).. New DP sens: 0.625, New DP ppv: 0.714, New DP F-measure: 0.667, New DP Energy: -25.38 ..((((((......(((((......))))).))))))((((...(((((((((((((...))))))))).))))..........)))) New DP sens: 0.594, New DP ppv: 0.679, New DP F-measure: 0.633, New DP Energy: -25.25 ..((((((..[[[[[[[[[[[....)))))).......]]]]......(((((((((...)))))))))..........]]]]]]].. New DP sens: 0.500, New DP ppv: 0.615, New DP F-measure: 0.552, New DP Energy: -24.93 New DP F-measure-avg: 0.626, New DP F-measure-best: 0.952, New DP best-subopt: 1, New DP num-subopt: 19 > HIV-1-RT-1-1 ucaagAAUUCCGUUUUCAGUCGGGAAAAACUGAACAa .......[[[[[..((((((]]]]]...))))))... .......(((((..[[[[[[)))))...]]]]]]... .......(((((..[[[[[[)))))...]]]]]]... Energy of known structure: -6.88 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -6.88 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.88 .......((((...[[[[[[..))))..]]]]]]... New DP sens: 0.545, New DP ppv: 0.600, New DP F-measure: 0.571, New DP Energy: -5.80 .......(((((........)))))............ New DP sens: 0.455, New DP ppv: 1.000, New DP F-measure: 0.625, New DP Energy: -3.56 ..............((((((........))))))... New DP sens: 0.545, New DP ppv: 1.000, New DP F-measure: 0.706, New DP Energy: -3.35 ............(((((..[[[[))))).]]]].... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.97 ....(((.......)))..((((......)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.95 .......((((...........))))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.28 ...........(((((.........)))))....... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.01 ............(((((......)))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.47 ............(((((....)))))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.43 ............(((((.....))))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: 0.33 New DP F-measure-avg: 0.264, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 10 > HIV-1-RT-1-3a gAAUAUCUUCCGAAGCCGAACGGGAAAACCGGCaucu .......(((((..[[[[..)))))....]]]].... ...........((.((((...........)))).)). .......(((((..[[[[..)))))....]]]].... Energy of known structure: -6.94 Initial sens: 0.444, Initial ppv: 0.667, Initial F-measure: 0.533, Initial Energy: -4.82 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.94 .......(((([[.[[[[....))))...]]]].]]. New DP sens: 0.444, New DP ppv: 0.400, New DP F-measure: 0.421, New DP Energy: -6.34 .....((((..[[.[[[[...))))....]]]].]]. New DP sens: 0.444, New DP ppv: 0.400, New DP F-measure: 0.421, New DP Energy: -6.14 .......((((...[[[[....))))...]]]].... New DP sens: 0.444, New DP ppv: 0.500, New DP F-measure: 0.471, New DP Energy: -5.86 .....((((.....[[[[...))))....]]]].... New DP sens: 0.444, New DP ppv: 0.500, New DP F-measure: 0.471, New DP Energy: -5.47 ...........((.((((...........)))).)). New DP sens: 0.444, New DP ppv: 0.667, New DP F-measure: 0.533, New DP Energy: -4.82 ..............((((...........)))).... New DP sens: 0.444, New DP ppv: 1.000, New DP F-measure: 0.615, New DP Energy: -4.39 ..............((((....[[[....)))).]]] New DP sens: 0.444, New DP ppv: 0.571, New DP F-measure: 0.500, New DP Energy: -3.67 .....(((([[[.........))))....]]]..... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.67 .......(((((........)))))............ New DP sens: 0.556, New DP ppv: 1.000, New DP F-measure: 0.714, New DP Energy: -2.46 ....................(((.....)))...... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.17 .........(((..........[[[....)))..]]] New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.39 .......((((...........))))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.14 .........(((...((....))......)))..... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.05 New DP F-measure-avg: 0.368, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 13 > HIV-1-RT-1-6 gAAGAAGAUUACCCAAGCGCAGGGGAGAAGCGCaucu ...........[[[..((((.]]].....)))).... ...........(((..[[[[.))).(((.]]]].))) ...........(((..[[[[.))).....]]]].... Energy of known structure: -7.25 Initial sens: 1.000, Initial ppv: 0.700, Initial F-measure: 0.824, Initial Energy: -6.15 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -7.25 ...........(((..[[[[..)))....]]]].... New DP sens: 0.571, New DP ppv: 0.571, New DP F-measure: 0.571, New DP Energy: -6.76 ................((((.........)))).... New DP sens: 0.571, New DP ppv: 1.000, New DP F-measure: 0.727, New DP Energy: -4.70 ................((((...[[[...)))).]]] New DP sens: 0.571, New DP ppv: 0.571, New DP F-measure: 0.571, New DP Energy: -3.79 .....((((.......((((.........)))))))) New DP sens: 0.571, New DP ppv: 0.500, New DP F-measure: 0.533, New DP Energy: -3.56 ...........(((.......)))............. New DP sens: 0.429, New DP ppv: 1.000, New DP F-measure: 0.600, New DP Energy: -3.21 ...........(((........)))............ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.22 .....((((..(((.......))).........)))) New DP sens: 0.429, New DP ppv: 0.429, New DP F-measure: 0.429, New DP Energy: -1.33 New DP F-measure-avg: 0.554, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 7 > HIV-1-RT-1-7 agGAAUCGACCCAAGCCAAAGGGGAUAAUGCGGCauc .........[[[..(((...]]]........)))... .((.......))..(((...(.(.....).))))... .........(((..[[[...)))........]]]... Energy of known structure: -5.60 Initial sens: 0.500, Initial ppv: 0.429, Initial F-measure: 0.462, Initial Energy: -2.23 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -5.60 .........(((..[[[....))).......]]]... New DP sens: 0.500, New DP ppv: 0.500, New DP F-measure: 0.500, New DP Energy: -5.11 .((.......))..(((..............)))... New DP sens: 0.500, New DP ppv: 0.600, New DP F-measure: 0.545, New DP Energy: -3.71 .........(((........))).............. New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -3.15 .........(((.........)))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.10 New DP F-measure-avg: 0.542, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 4 > HIV-1-RT-1-8 ucaagGAUUAACCGACGCCAACGGGAGAAUGGCAGGGau ...........[[[..((((.]]].....))))...... ...........((...((((.(....)..))))..)).. ...........(((..[[[[.))).....]]]]...... Energy of known structure: -6.53 Initial sens: 0.571, Initial ppv: 0.571, Initial F-measure: 0.571, Initial Energy: -3.73 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.53 ...........((...((((.........)))).))... New DP sens: 0.571, New DP ppv: 0.667, New DP F-measure: 0.615, New DP Energy: -4.53 ....((.....))...((((.........))))...... New DP sens: 0.571, New DP ppv: 0.667, New DP F-measure: 0.615, New DP Energy: -4.01 ...........(((.......)))............... New DP sens: 0.429, New DP ppv: 1.000, New DP F-measure: 0.600, New DP Energy: -2.08 New DP F-measure-avg: 0.708, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 3 > HIV-1-RT-1-9b gAGAGUAUCAUCCGUGCCGGCGGGAUAUCGGCGaucu ..........[[[[((((((]]]]...)))))).... ((..((....(((((....)))))......))..)). .........((((.[[[[[[..)))).]]]]]].... Energy of known structure: -6.63 Initial sens: 0.400, Initial ppv: 0.444, Initial F-measure: 0.421, Initial Energy: -4.37 New DP sens: 0.600, New DP ppv: 0.600, New DP F-measure: 0.600, New DP Energy: -6.00 ..............((((((..[[[[.))))))]]]] New DP sens: 0.600, New DP ppv: 0.600, New DP F-measure: 0.600, New DP Energy: -5.24 (...(((((..((((....)))))))))...)..... New DP sens: 0.300, New DP ppv: 0.300, New DP F-measure: 0.300, New DP Energy: -5.23 ..............((((((.......)))))).... New DP sens: 0.600, New DP ppv: 1.000, New DP F-measure: 0.750, New DP Energy: -4.26 ..........(((((....)))))............. New DP sens: 0.400, New DP ppv: 0.800, New DP F-measure: 0.533, New DP Energy: -3.43 ....(((((..(((...)))...)))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.77 ....(((((..[[[.........)))))]]]...... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.35 ...........(((........[[[[..)))..]]]] New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.29 ....(((((...[[[........)))))..]]].... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.14 ...........(((...)))(((....)))....... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.78 ...........(((..............)))...... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.73 ............(((.......[[[[....)))]]]] New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.61 .........((((.........))))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.45 ............(((.....(((....)))))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.38 New DP F-measure-avg: 0.199, New DP F-measure-best: 0.750, New DP best-subopt: 3, New DP num-subopt: 13 > HIV-1-RT-2-10 agUAAAUGAGUCCGUAGGAGGCGGGAUAUCUCCaAcu ..........[[[[..(((((]]]]...))))).... .............((.(((((.......))))).)). .........(((([[.[[[[[..)))).]]]]].]]. Energy of known structure: -6.70 Initial sens: 0.556, Initial ppv: 0.714, Initial F-measure: 0.625, Initial Energy: -4.67 New DP sens: 0.556, New DP ppv: 0.455, New DP F-measure: 0.500, New DP Energy: -6.57 .........((((...[[[[[..)))).]]]]].... New DP sens: 0.556, New DP ppv: 0.556, New DP F-measure: 0.556, New DP Energy: -6.15 .............((.(((((.......))))).)). New DP sens: 0.556, New DP ppv: 0.714, New DP F-measure: 0.625, New DP Energy: -4.67 ................(((((.......))))).... New DP sens: 0.556, New DP ppv: 1.000, New DP F-measure: 0.714, New DP Energy: -4.31 ..........(((((.[[[.)))))...]]]...... New DP sens: 0.444, New DP ppv: 0.500, New DP F-measure: 0.471, New DP Energy: -3.94 .........(((.......))).(((....))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.14 ..........(((...)))....(((....))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.01 .........((((...[[[....)))).]]]...... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.87 ..........(((((.....)))))............ New DP sens: 0.444, New DP ppv: 0.800, New DP F-measure: 0.571, New DP Energy: -1.72 .........((((..........)))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.44 ..........(((...)))((.((....)).)).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.16 New DP F-measure-avg: 0.312, New DP F-measure-best: 0.714, New DP best-subopt: 3, New DP num-subopt: 10 > HIV-1-RT-2-11 gUCAUAUUACCGUUACUCCUCGGGAUAAAGGAGaucu .........[[[...(((((]]].....))))).... ...............(((((........))))).... .........(((...[[[[[))).....]]]]].... Energy of known structure: -6.75 Initial sens: 0.625, Initial ppv: 1.000, Initial F-measure: 0.769, Initial Energy: -3.81 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.75 ...............(((((..[[[[..)))))]]]] New DP sens: 0.625, New DP ppv: 0.556, New DP F-measure: 0.588, New DP Energy: -5.10 ...............(((((........))))).... New DP sens: 0.625, New DP ppv: 1.000, New DP F-measure: 0.769, New DP Energy: -3.81 .........(((........))).............. New DP sens: 0.375, New DP ppv: 1.000, New DP F-measure: 0.545, New DP Energy: -2.98 New DP F-measure-avg: 0.726, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 3 > HIV-1-RT-2-12 ucaagAAUAAUCCGACUCGCGGGAUAACGAGAAGaGc ..........[[[[.((((]]]]....))))...... ...............((((........))))...... .........((((..[[[[..))))..]]]]...... Energy of known structure: -4.54 Initial sens: 0.500, Initial ppv: 1.000, Initial F-measure: 0.667, Initial Energy: -2.63 New DP sens: 0.500, New DP ppv: 0.500, New DP F-measure: 0.500, New DP Energy: -4.57 ..........((((.[[[[))))....]]]]...... New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -4.54 ..........((...((((........))))..)).. New DP sens: 0.500, New DP ppv: 0.667, New DP F-measure: 0.571, New DP Energy: -2.73 ...............((((........))))...... New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -2.63 ..........((((.....)))).............. New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -2.20 .........((((........))))............ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.82 New DP F-measure-avg: 0.567, New DP F-measure-best: 1.000, New DP best-subopt: 1, New DP num-subopt: 5 > HIV-1-RT-2-1b caagAAUAUAUCCGAACUCGACGGGAUAACGAGAAGaGc ..........[[[[..((((.]]]]....))))...... ........(((((..........)))))........... ........(((((...[[[[...))))).]]]]...... Energy of known structure: -4.51 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -2.18 New DP sens: 0.500, New DP ppv: 0.444, New DP F-measure: 0.471, New DP Energy: -4.69 ..........((((..[[[[.))))....]]]]...... New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -4.51 ........(((((..........)))))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.18 ................((((.........))))...... New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -2.18 ..........((((.......)))).............. New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -1.83 New DP F-measure-avg: 0.561, New DP F-measure-best: 1.000, New DP best-subopt: 1, New DP num-subopt: 4 > HIV-1-RT-2-2b gacaaucaagUACCUAGGUGAUAAAAGGGAGAACACGUGUGa ............[[[..(((.....]]].....)))...... .(((........(((..........))).........))).. ....((((....[[[...))))...]]].............. Energy of known structure: -3.68 Initial sens: 0.500, Initial ppv: 0.500, Initial F-measure: 0.500, Initial Energy: -1.85 New DP sens: 0.500, New DP ppv: 0.429, New DP F-measure: 0.462, New DP Energy: -3.55 ....((((....[[[...))))....]]]............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.13 .(((........(((...........)))........))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.87 ............(((..........))).............. New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -1.58 ............(((...........)))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.10 ....((((..........)))).................... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.43 New DP F-measure-avg: 0.188, New DP F-measure-best: 0.667, New DP best-subopt: 3, New DP num-subopt: 5 > HIV-1-RT-2-3a gUUAAACAUAAUCCGUGAUCUUUCACACGGGAGaucuaugaaaga ...........[[[[[[.(((((((]]]]]].......))))))) .............((((((((..(....)..))))).)))..... ...........((((((.[[[[[[[)))))).......]]]]]]] Energy of known structure: -8.37 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -2.83 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.37 ...........((...((((((((....))))))))...)).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.30 ................((((((((....))))))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.87 ...........(((....[[[[[[[....)))......]]]]]]] New DP sens: 0.538, New DP ppv: 0.700, New DP F-measure: 0.609, New DP Energy: -5.39 ..............(((([[[[))))..]]]]............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.92 ...........((((((........)))))).............. New DP sens: 0.462, New DP ppv: 1.000, New DP F-measure: 0.632, New DP Energy: -4.58 ..................(((((((...((....))..))))))) New DP sens: 0.538, New DP ppv: 0.778, New DP F-measure: 0.636, New DP Energy: -4.13 ...........(((((((....))))...)))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.42 ..............((((....))))..((....))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.77 New DP F-measure-avg: 0.320, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 8 > HIV-1-RT-2-4a agUAGAUAUCCGAAGCUCAACGGGAUAAUGAGCaucu ........[[[[..(((((.]]]]....))))).... ......((((([[.[[[[[...))))).]]]]].]]. ......((((([[.[[[[[...))))).]]]]].]]. Energy of known structure: -7.04 Initial sens: 0.556, Initial ppv: 0.417, Initial F-measure: 0.476, Initial Energy: -7.71 New DP sens: 0.556, New DP ppv: 0.417, New DP F-measure: 0.476, New DP Energy: -7.71 ......(((((...[[[[[...))))).]]]]].... New DP sens: 0.556, New DP ppv: 0.500, New DP F-measure: 0.526, New DP Energy: -7.23 ........((((..[[[[[.))))....]]]]].... New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -7.04 ..............(((((...[[[[..)))))]]]] New DP sens: 0.556, New DP ppv: 0.556, New DP F-measure: 0.556, New DP Energy: -5.23 ...........((.(((((.........))))).)). New DP sens: 0.556, New DP ppv: 0.714, New DP F-measure: 0.625, New DP Energy: -5.16 ..............(((((.........))))).... New DP sens: 0.556, New DP ppv: 1.000, New DP F-measure: 0.714, New DP Energy: -4.73 ...((((.......(((((.........))))))))) New DP sens: 0.556, New DP ppv: 0.556, New DP F-measure: 0.556, New DP Energy: -3.33 (((...[[[[[...))).....]]]]].......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.95 (((.....[[[[..)))...]]]]............. New DP sens: 0.444, New DP ppv: 0.571, New DP F-measure: 0.500, New DP Energy: -2.51 ......(((((...........))))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.08 ........((((........))))............. New DP sens: 0.444, New DP ppv: 1.000, New DP F-measure: 0.615, New DP Energy: -1.77 ((([[[[.[[[[..)))...]]]].........]]]] New DP sens: 0.444, New DP ppv: 0.364, New DP F-measure: 0.400, New DP Energy: -1.64 New DP F-measure-avg: 0.497, New DP F-measure-best: 1.000, New DP best-subopt: 2, New DP num-subopt: 11 > HIV-1-RT-2-5a ucaagAUAGUAUCCGUUCUUGAUCAUCGGGACAAAUGaucu ...........[[[[.....((((((]]]]....)))))). ..............(((((.[[[[[[.)))))..]]]]]]. ..............(((((.[[[[[[.)))))..]]]]]]. Energy of known structure: -5.91 Initial sens: 0.600, Initial ppv: 0.545, Initial F-measure: 0.571, Initial Energy: -7.40 New DP sens: 0.600, New DP ppv: 0.545, New DP F-measure: 0.571, New DP Energy: -7.40 ...........((((.....[[[[[[))))....]]]]]]. New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -5.91 ((((((.....[[[[.))))))....]]]]........... New DP sens: 0.400, New DP ppv: 0.400, New DP F-measure: 0.400, New DP Energy: -5.47 ...........(((......[[[[[[..)))...]]]]]]. New DP sens: 0.600, New DP ppv: 0.667, New DP F-measure: 0.632, New DP Energy: -5.33 ((((((.....[[[..))))))......]]].......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.83 ((((((..........))))))..((((.......)))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.74 ..((((..........))))((((((........)))))). New DP sens: 0.600, New DP ppv: 0.600, New DP F-measure: 0.600, New DP Energy: -3.55 ((((((..........))))))......(((.......))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.54 ...((((.......(((((........))))).....)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.42 ..............(((((........)))))......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.41 ...((((....((((...........)))).......)))) New DP sens: 0.400, New DP ppv: 0.500, New DP F-measure: 0.444, New DP Energy: -2.47 ...........((((...........))))........... New DP sens: 0.400, New DP ppv: 1.000, New DP F-measure: 0.571, New DP Energy: -2.40 ................((((((...)))))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.84 ...((((.........((((((...))))))......)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.13 ...((((....(((..............)))......)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.84 New DP F-measure-avg: 0.281, New DP F-measure-best: 1.000, New DP best-subopt: 1, New DP num-subopt: 14 > HIV-1-RT-2-6b agUGAAACUUAACCGUUAUCAUAGAUCGGGACAAaucuauga ............[[[...((((((((]]].....)))))))) ..................((((((((........)))))))) ............(((...[[[[[[[[))).....]]]]]]]] Energy of known structure: -7.11 Initial sens: 0.727, Initial ppv: 1.000, Initial F-measure: 0.842, Initial Energy: -4.33 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -7.11 ..................((((((((........)))))))) New DP sens: 0.727, New DP ppv: 1.000, New DP F-measure: 0.842, New DP Energy: -4.33 .((((.......[[[...))))....]]]............. New DP sens: 0.273, New DP ppv: 0.429, New DP F-measure: 0.333, New DP Energy: -3.13 ............(((...........)))............. New DP sens: 0.273, New DP ppv: 1.000, New DP F-measure: 0.429, New DP Energy: -2.65 .(((((((......))).))))......(((....))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.41 .((((.............)))).....((......))..... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.50 New DP F-measure-avg: 0.434, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 5 > HIV-1-RT-2-7a agAUAUGAUCCGUAAGAGGACGGGAUAAACCUCAac ........[[[[...((((.]]]].....))))... ........(((((..[[[[))))).....]]]]... ........(((((..[[[[))))).....]]]]... Energy of known structure: -5.60 Initial sens: 1.000, Initial ppv: 0.889, Initial F-measure: 0.941, Initial Energy: -6.89 New DP sens: 1.000, New DP ppv: 0.889, New DP F-measure: 0.941, New DP Energy: -6.89 .......((((....[[[[...))))...]]]]... New DP sens: 0.500, New DP ppv: 0.500, New DP F-measure: 0.500, New DP Energy: -5.28 ...............((((..........))))... New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -3.35 ........(((......))).(((......)))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.69 ........(((((......)))))............ New DP sens: 0.500, New DP ppv: 0.800, New DP F-measure: 0.615, New DP Energy: -2.00 ........(((......))).(((.....))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.95 .......((((...........)))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.23 New DP F-measure-avg: 0.389, New DP F-measure-best: 0.941, New DP best-subopt: 0, New DP num-subopt: 6 > HIV-1-RT-2-9 ucaagGUUUCCGAAAGAAAUCGGGAAAACUGucu .......(((((..[[[...)))))......]]] .((...(((((((......)))))))...))... ...((.(((((((......)))))))..)).... Energy of known structure: -2.87 Initial sens: 0.625, Initial ppv: 0.556, Initial F-measure: 0.588, Initial Energy: -4.89 New DP sens: 0.625, New DP ppv: 0.556, New DP F-measure: 0.588, New DP Energy: -4.96 ....(((((((((......))))..))))).... New DP sens: 0.375, New DP ppv: 0.333, New DP F-measure: 0.353, New DP Energy: -4.69 ......(((((((......)))))))........ New DP sens: 0.625, New DP ppv: 0.714, New DP F-measure: 0.667, New DP Energy: -4.12 ....((((((.....))))))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.03 ....((((((.....)))))).(((......))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.28 ......(((((...........)))))....... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.85 ....(((((.............[[[))))).]]] New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.29 New DP F-measure-avg: 0.230, New DP F-measure-best: 0.667, New DP best-subopt: 2, New DP num-subopt: 6 > Hs_SRP_pkn GCCGGGCGCGGUGGCGCGUGCCUGUAGUCCCAGCUACUCGGGAGGCU (((.((((((.[[[[.)))))).....((((.]]]]...))))))). (((.((((((......)))))).....((((........))))))). ..((((((((......))))))))...(((([[[[....))))]]]] Energy of known structure: 0.13 Initial sens: 0.765, Initial ppv: 1.000, Initial F-measure: 0.867, Initial Energy: -11.71 New DP sens: 0.588, New DP ppv: 0.625, New DP F-measure: 0.606, New DP Energy: -13.44 ..((((((((......))))))))...((((........)))).... New DP sens: 0.588, New DP ppv: 0.833, New DP F-measure: 0.690, New DP Energy: -12.15 ((((((((((......)))))))....((((........))))))). New DP sens: 0.765, New DP ppv: 0.929, New DP F-measure: 0.839, New DP Energy: -11.95 .....(((([[[[)))).]]]].....(((([[[[....))))]]]] New DP sens: 0.235, New DP ppv: 0.250, New DP F-measure: 0.242, New DP Energy: -11.50 (((..(((((....))))).((((((((....)))))..))).))). New DP sens: 0.176, New DP ppv: 0.188, New DP F-measure: 0.182, New DP Energy: -11.27 ((((((((((......)))))))(((((....)))))......))). New DP sens: 0.529, New DP ppv: 0.600, New DP F-measure: 0.562, New DP Energy: -11.14 (((..((((....))))...((((((((....)))))..))).))). New DP sens: 0.176, New DP ppv: 0.200, New DP F-measure: 0.188, New DP Energy: -10.81 (((..(((((....))))).((((((((....))))..)))).))). New DP sens: 0.176, New DP ppv: 0.188, New DP F-measure: 0.182, New DP Energy: -10.52 ...(((((((....)))).[[[[[[[[[))).]]]]].....]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -10.49 .....(((([[[[)))).]]]].((..((((........)))).)). New DP sens: 0.235, New DP ppv: 0.286, New DP F-measure: 0.258, New DP Energy: -10.47 ..((((((((......)))))))).......((((........)))) New DP sens: 0.353, New DP ppv: 0.500, New DP F-measure: 0.414, New DP Energy: -10.34 ..((((((((......)))))))).((((((........))..)))) New DP sens: 0.471, New DP ppv: 0.571, New DP F-measure: 0.516, New DP Energy: -10.26 .....(((([[[[)))).]]]].....((((........)))).... New DP sens: 0.235, New DP ppv: 0.333, New DP F-measure: 0.276, New DP Energy: -10.21 (((..(((((....)))))....(((((....)))))......))). New DP sens: 0.176, New DP ppv: 0.231, New DP F-measure: 0.200, New DP Energy: -10.06 (((..((((....))))...((((((((....))))..)))).))). New DP sens: 0.176, New DP ppv: 0.200, New DP F-measure: 0.188, New DP Energy: -10.06 (((..(((((....)))))........((((........))))))). New DP sens: 0.412, New DP ppv: 0.583, New DP F-measure: 0.483, New DP Energy: -9.96 .....((((....))))..((((.....(((........))))))). New DP sens: 0.176, New DP ppv: 0.273, New DP F-measure: 0.214, New DP Energy: -9.77 ...((((..[[[[[[....{{{{...))))..]]]]]]....}}}}. New DP sens: 0.235, New DP ppv: 0.286, New DP F-measure: 0.258, New DP Energy: -9.72 .....(((((....)))))........(((([[[[....))))]]]] New DP sens: 0.235, New DP ppv: 0.308, New DP F-measure: 0.267, New DP Energy: -9.67 ((((....))))(((....))).....(((([[[[....))))]]]] New DP sens: 0.235, New DP ppv: 0.267, New DP F-measure: 0.250, New DP Energy: -9.61 New DP F-measure-avg: 0.341, New DP F-measure-best: 0.839, New DP best-subopt: 2, New DP num-subopt: 19 > MMTVgag-pro GGGGCAGUCCCCUAGCCCCGCUCAAAAGGGGGAU [[[[[.(((((((.]]]]]........))))))) (((((.[[[[[[[.)))))........]]]]]]] (((((.[[[[[[[.)))))........]]]]]]] Energy of known structure: -13.34 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -13.34 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -13.34 (((((..[[[[[[.))))).......]]]]]].. New DP sens: 0.417, New DP ppv: 0.455, New DP F-measure: 0.435, New DP Energy: -12.35 (((((....[[[[.))))).........]]]].. New DP sens: 0.417, New DP ppv: 0.556, New DP F-measure: 0.476, New DP Energy: -10.26 .((((.[[[[[[[......))))....]]]]]]] New DP sens: 0.583, New DP ppv: 0.636, New DP F-measure: 0.609, New DP Energy: -9.89 ((((....))))...((((........))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.67 (((((..[[[[...)))))........]]]]... New DP sens: 0.417, New DP ppv: 0.556, New DP F-measure: 0.476, New DP Energy: -9.64 .(((..[[[[[[[...)))........]]]]]]] New DP sens: 0.583, New DP ppv: 0.700, New DP F-measure: 0.636, New DP Energy: -9.44 .(((..[[[[[[[[[[)))]]].....]]]]]]] New DP sens: 0.583, New DP ppv: 0.538, New DP F-measure: 0.560, New DP Energy: -9.15 .((((..[[[[[[......))))...]]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.90 (((...[[[[[[[..))).........]]]]]]] New DP sens: 0.583, New DP ppv: 0.700, New DP F-measure: 0.636, New DP Energy: -8.51 (((((.........))))).(((....))).... New DP sens: 0.417, New DP ppv: 0.625, New DP F-measure: 0.500, New DP Energy: -8.50 .(((...[[[[[[...))).......]]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.46 ((((....))))...((((.........)))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.42 (((((.....[[[.)))))..........]]].. New DP sens: 0.417, New DP ppv: 0.625, New DP F-measure: 0.500, New DP Energy: -8.22 ((((....)))).((([[[))).......]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.77 ((((.....))))..((((........))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.73 .(((...[[[[[[[[[)))]]]....]]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.70 (((((..[[[....)))))........]]].... New DP sens: 0.417, New DP ppv: 0.625, New DP F-measure: 0.500, New DP Energy: -7.66 .((((..........[[[[))))....]]]]... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.62 (((....[[[[[[..)))........]]]]]].. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.53 New DP F-measure-avg: 0.316, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 19 > Ni_VS GGGCGUCGUCGCCCCGAGUCGUAGCAGUUGACUACUGUUAUG ((((...[[[)))).....(((((((((.]]].))))))))) (((((....))))).....(((((((((.....))))))))) (((((....))))).....(((((((((.....))))))))) Energy of known structure: -9.40 Initial sens: 0.812, Initial ppv: 0.929, Initial F-measure: 0.867, Initial Energy: -11.09 New DP sens: 0.812, New DP ppv: 0.929, New DP F-measure: 0.867, New DP Energy: -11.09 (((....[[[[.)))....(((((((((]]]].))))))))) New DP sens: 0.750, New DP ppv: 0.750, New DP F-measure: 0.750, New DP Energy: -8.72 (((((....)))))......((((.......))))....... New DP sens: 0.250, New DP ppv: 0.444, New DP F-measure: 0.320, New DP Energy: -8.69 (((.[[[[....)))....(((((((((]]]].))))))))) New DP sens: 0.562, New DP ppv: 0.562, New DP F-measure: 0.562, New DP Energy: -8.53 (((((....)))))..(((((.......)))))......... New DP sens: 0.250, New DP ppv: 0.400, New DP F-measure: 0.308, New DP Energy: -8.00 New DP F-measure-avg: 0.561, New DP F-measure-best: 0.867, New DP best-subopt: 0, New DP num-subopt: 4 > PEMV UUCCGGUCGACUCCGGAGAAACAAAGUC ((((((..[[[[))))))......]]]] ((((((......)))))).......... ((((((..[[[[))))))......]]]] Energy of known structure: -6.31 Initial sens: 0.600, Initial ppv: 1.000, Initial F-measure: 0.750, Initial Energy: -5.21 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.31 .(((((......)))))........... New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -5.74 New DP F-measure-avg: 0.833, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 1 > PLRV-S GCGGCACCGUCCGCCAAAACAAACGG [[[[..((((]]]]........)))) ((((......))))............ ((((..[[[[))))........]]]] Energy of known structure: -5.84 Initial sens: 0.500, Initial ppv: 1.000, Initial F-measure: 0.667, Initial Energy: -2.91 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -5.84 ..(((.[[[[..))).......]]]] New DP sens: 0.500, New DP ppv: 0.571, New DP F-measure: 0.533, New DP Energy: -5.21 ..(((.......)))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.13 ((((......))))............ New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -2.91 ......((((............)))) New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -1.29 ..........(((..........))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.09 (((....)))(((..........))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -0.98 New DP F-measure-avg: 0.410, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 6 > PRRSV-16244B GCCGCCAGCGGCUUGACCCGCUGUGGUCGCGGCGGCUUGGUUGUUACUGAGACAGCGG ((((((.((((((....[[[[[[[))))))))))))...............]]]]]]] ((((((.((((((...........))))))))))))...((((((.....)))))).. ((((((..(((((....[[[[[[[))))).))))))(((((....))))).]]]]]]] Energy of known structure: -20.54 Initial sens: 0.632, Initial ppv: 0.667, Initial F-measure: 0.649, Initial Energy: -17.74 New DP sens: 0.947, New DP ppv: 0.783, New DP F-measure: 0.857, New DP Energy: -18.08 ((((((.((((((...........))))))))))))...((((((.....)))))).. New DP sens: 0.632, New DP ppv: 0.667, New DP F-measure: 0.649, New DP Energy: -17.74 (((((([[[[[[[....{{{{{{{......))))))..]]]]]]]......}}}}}}} New DP sens: 0.684, New DP ppv: 0.650, New DP F-measure: 0.667, New DP Energy: -17.43 (((((.[[[[[[[....{{{{{{{....))))).....]]]]]]]......}}}}}}} New DP sens: 0.368, New DP ppv: 0.368, New DP F-measure: 0.368, New DP Energy: -15.51 (((((((((((......)))))).....)))))......((((((.....)))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.75 ((((....)))).(((((.[[[[[)))))..]]]]]...((((((.....)))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.62 ((((....)))).....((((((((((.(((((......))))).)))...))))))) New DP sens: 0.368, New DP ppv: 0.368, New DP F-measure: 0.368, New DP Energy: -14.55 (((((((((((......)))))).....)))))(.((((((....)))))).)..... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.43 (((((............[[[[[[[....)))))..((((((....))))))]]]]]]] New DP sens: 0.368, New DP ppv: 0.389, New DP F-measure: 0.378, New DP Energy: -14.43 ((((....)))).....(((((((....)))))))((((((....))))))....... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.28 ((((....)))).....(((((((....)))))))....((((((.....)))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.28 (((((([[[[[[[.((((......))))..))))))..]]]]]]].(((......))) New DP sens: 0.316, New DP ppv: 0.300, New DP F-measure: 0.308, New DP Energy: -14.17 (((((..(((((.......)))))....)))))......((((((.....)))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -14.04 ((((((.(((((.......)))))......))))))...((((((.....)))))).. New DP sens: 0.316, New DP ppv: 0.353, New DP F-measure: 0.333, New DP Energy: -13.86 New DP F-measure-avg: 0.281, New DP F-measure-best: 0.857, New DP best-subopt: 0, New DP num-subopt: 13 > PRRSV-LV GCCGCCAGCGGCUUGACCCGCUGUGGCCGCGGCGGCCUAGUUGUGACUGAAACGGCGG ((((((.((((((....[[[[[[[))))))))))))...............]]]]]]] ((((((.((((((...........))))))))))))...(((((.......))))).. ((((((.((((((...........))))))))))))...(((((.......))))).. Energy of known structure: -20.81 Initial sens: 0.632, Initial ppv: 0.706, Initial F-measure: 0.667, Initial Energy: -19.48 New DP sens: 0.632, New DP ppv: 0.706, New DP F-measure: 0.667, New DP Energy: -19.48 ((((((..(((((....[[[[[[[))))).))))))...............]]]]]]] New DP sens: 0.947, New DP ppv: 1.000, New DP F-measure: 0.973, New DP Energy: -18.70 (((((((((((......)))))).....))))).(((..(((........)))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -15.59 New DP F-measure-avg: 0.547, New DP F-measure-best: 0.973, New DP best-subopt: 1, New DP num-subopt: 2 > SARS-CoV UGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUCUACAGGGCU (((((((((((...[[[[[[[)))))))))))((((((((.........))).)))))...]].]]]]] .((((((((((.((.....))))))))))))(((((((((((....)).))).)))))).......... .((((((((((...[[[[[..))))))))))(((((((((.........))).)))))).....]]]]] Energy of known structure: -18.46 Initial sens: 0.692, Initial ppv: 0.783, Initial F-measure: 0.735, Initial Energy: -14.43 New DP sens: 0.885, New DP ppv: 0.958, New DP F-measure: 0.920, New DP Energy: -18.40 (((((((((((...[[[[[..)))))))))))((((((((.........))).)))))......]]]]] New DP sens: 0.923, New DP ppv: 1.000, New DP F-measure: 0.960, New DP Energy: -18.13 .((((((((((..........)))))))))).((((((((.........))).)))))........... New DP sens: 0.692, New DP ppv: 1.000, New DP F-measure: 0.818, New DP Energy: -16.33 (((((((((((..........))))))))))).(((((((.........))).))))((((...)))). New DP sens: 0.692, New DP ppv: 0.818, New DP F-measure: 0.750, New DP Energy: -15.74 (((((((((((....[[[...))))))))))).]]].(((.........))).....(((.....))). New DP sens: 0.538, New DP ppv: 0.700, New DP F-measure: 0.609, New DP Energy: -14.77 .((((((((((......[[[[))))))))))]]]]..(((.........))).....(((.....))). New DP sens: 0.500, New DP ppv: 0.650, New DP F-measure: 0.565, New DP Energy: -14.65 (((((((((((....[[[...))))))))))).......]]]....((.(((..........))).)). New DP sens: 0.423, New DP ppv: 0.579, New DP F-measure: 0.489, New DP Energy: -14.60 (((((((((((....[[[...))))))))))).]]]...((((..........))))((((...)))). New DP sens: 0.423, New DP ppv: 0.500, New DP F-measure: 0.458, New DP Energy: -14.51 .((((((((((....[[[...))))))))))((((((..]]]...........)))))).......... New DP sens: 0.577, New DP ppv: 0.789, New DP F-measure: 0.667, New DP Energy: -14.40 .((((((((((......[[[[))))))))))]]]]....((((..........))))((((...)))). New DP sens: 0.385, New DP ppv: 0.455, New DP F-measure: 0.417, New DP Energy: -14.30 (((((((((((...[[[[[..)))))))))))......((((...............))))...]]]]] New DP sens: 0.615, New DP ppv: 0.800, New DP F-measure: 0.696, New DP Energy: -14.27 (((((((((((....[[[...))))))))))).......]]]...............((((...)))). New DP sens: 0.423, New DP ppv: 0.611, New DP F-measure: 0.500, New DP Energy: -13.65 (((((((((((....[[[...))))))))))).]]]..((((...............))))........ New DP sens: 0.423, New DP ppv: 0.611, New DP F-measure: 0.500, New DP Energy: -13.05 ...((((((((..........))))))))((((.......))))..((.(((..........))).)). New DP sens: 0.308, New DP ppv: 0.471, New DP F-measure: 0.372, New DP Energy: -12.84 .((((((((((......[[[[))))))))))]]]]...((((...............))))........ New DP sens: 0.385, New DP ppv: 0.556, New DP F-measure: 0.455, New DP Energy: -12.84 (((((((((((..........)))))))))))......((((...............))))........ New DP sens: 0.423, New DP ppv: 0.733, New DP F-measure: 0.537, New DP Energy: -12.36 New DP F-measure-avg: 0.607, New DP F-measure-best: 0.960, New DP best-subopt: 1, New DP num-subopt: 15 > SNV GGGUUCUCCCGCCCUCCGUGAACCCAGGCUAAAAGUUAAGGUAGGGGGGC [[[[[[.[..(((((((].]]]]]]..................))))))) (((....)))(((((((....(((..(((.....)))..))).))))))) ((((((....[[[[[[[..))))))..................]]]]]]] Energy of known structure: -13.40 Initial sens: 0.500, Initial ppv: 0.438, Initial F-measure: 0.467, Initial Energy: -11.14 New DP sens: 0.929, New DP ppv: 1.000, New DP F-measure: 0.963, New DP Energy: -13.02 (((....)))(((((((.....((...(((...)))...))..))))))) New DP sens: 0.500, New DP ppv: 0.467, New DP F-measure: 0.483, New DP Energy: -11.96 ((((((.[[[.[[[[....)))))).................]]]]]]]. New DP sens: 0.429, New DP ppv: 0.462, New DP F-measure: 0.444, New DP Energy: -11.85 ((((((.....[[[[[...))))))..................]]]]].. New DP sens: 0.429, New DP ppv: 0.545, New DP F-measure: 0.480, New DP Energy: -9.81 (((....)))..(((((....(((...(((...)))...)))..))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.81 (((([[[[[[)))).......(((...(((...)))...))).]]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.54 ((((((......[[[[[..))))))...................]]]]]. New DP sens: 0.429, New DP ppv: 0.545, New DP F-measure: 0.480, New DP Energy: -9.34 (((....))).((((((...(((...........)))..)).)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.32 (((....))).(((((.....(((...(((...)))...))).))))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.22 ((((......))))........(((..(((.........)))..)))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.08 ((((((....[[[{{{{..)))))).]]]................}}}}. New DP sens: 0.429, New DP ppv: 0.462, New DP F-measure: 0.444, New DP Energy: -9.05 .......(((.((((((...(((...........)))..)).))))))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -9.04 ((((.[[[[[)))).......(((...(((...)))...)))..]]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.88 ((((((.....[[[[....)))))).................]]]].... New DP sens: 0.429, New DP ppv: 0.600, New DP F-measure: 0.500, New DP Energy: -8.82 (((((([[[[[[[......)))))).]]]................]]]]. New DP sens: 0.429, New DP ppv: 0.462, New DP F-measure: 0.444, New DP Energy: -8.44 ((((...[[[))))........(((..(((.........))).)))]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.02 (((....)))...((((....(((...(((...)))...)))...)))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.99 New DP F-measure-avg: 0.249, New DP F-measure-best: 0.963, New DP best-subopt: 0, New DP num-subopt: 16 > TMV-L GGGAUUCGAAUUCCCCCGGAACCCCCGGUUGGGGCCCA ...............[[[...((((]]]..)))).... (((........((((((((.....))))..))))))). ((((.......))))..((..((((.....)))).)). Energy of known structure: -6.37 Initial sens: 0.429, Initial ppv: 0.273, Initial F-measure: 0.333, Initial Energy: -8.32 New DP sens: 0.571, New DP ppv: 0.400, New DP F-measure: 0.471, New DP Energy: -9.99 ((((.......))))((((..[[[))))..]]]..... New DP sens: 0.429, New DP ppv: 0.273, New DP F-measure: 0.333, New DP Energy: -9.94 (((........[[[[[[[[..)))]]]]..]]]].... New DP sens: 0.429, New DP ppv: 0.273, New DP F-measure: 0.333, New DP Energy: -8.74 (((..........))).((..((((.....)))).)). New DP sens: 0.571, New DP ppv: 0.444, New DP F-measure: 0.500, New DP Energy: -8.48 (((........((((((((.....))))..))))))). New DP sens: 0.429, New DP ppv: 0.273, New DP F-measure: 0.333, New DP Energy: -8.32 (((((....))))).((((..[[[))))..]]]..... New DP sens: 0.429, New DP ppv: 0.250, New DP F-measure: 0.316, New DP Energy: -8.25 (((...........)))((..((((.....)))).)). New DP sens: 0.571, New DP ppv: 0.444, New DP F-measure: 0.500, New DP Energy: -8.14 (((((....)))))...((..((((.....)))).)). New DP sens: 0.571, New DP ppv: 0.364, New DP F-measure: 0.444, New DP Energy: -8.06 (((.......[[[[)))]]]].((((....)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.01 (((.........[[[[...[[[[)))]]]]]]]].... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.78 (((.......[[[[.[[[[..)))]]]]..]]]].... New DP sens: 0.429, New DP ppv: 0.273, New DP F-measure: 0.333, New DP Energy: -7.57 ((((.......)))).......((((....)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.50 ((((.......))))......((((.....)))).... New DP sens: 0.571, New DP ppv: 0.500, New DP F-measure: 0.533, New DP Energy: -7.42 (((.......[[[[)))]]]]((((.....)))).... New DP sens: 0.571, New DP ppv: 0.364, New DP F-measure: 0.444, New DP Energy: -7.31 ((((.......))))....(((([[[)))).]]].... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.24 (((.........(((((((.....)))...))))))). New DP sens: 0.286, New DP ppv: 0.200, New DP F-measure: 0.235, New DP Energy: -7.23 ...........((((((((.....))))..)))).... New DP sens: 0.429, New DP ppv: 0.375, New DP F-measure: 0.400, New DP Energy: -7.20 (((..........[[[[[[..)))....]]]]]].... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.05 (((.......((((.((((.....))))..))))))). New DP sens: 0.429, New DP ppv: 0.273, New DP F-measure: 0.333, New DP Energy: -6.94 (((...........))).....((((....)))).... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.82 New DP F-measure-avg: 0.276, New DP F-measure-best: 0.533, New DP best-subopt: 12, New DP num-subopt: 19 > BChV GCGGCGCCGACCGCCAAACAACCGGC [[[[.((((.]]]]........)))) ..((((.....))))........... ((((.[[[[.))))........]]]] Energy of known structure: -6.50 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -3.35 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -6.50 ((((......))))............ New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -3.49 ..((((.....))))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.35 .....((((.............)))) New DP sens: 0.500, New DP ppv: 1.000, New DP F-measure: 0.667, New DP Energy: -3.21 ............(((........))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.20 .(((.................))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.46 ..........(((.........))). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.05 New DP F-measure-avg: 0.333, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 6 > CABYV GGCGGCGGCGACCGCCGAAACAACCGC (((((..[[[.)))))........]]] ..((((((...)))))).......... (((((..[[[.)))))........]]] Energy of known structure: -7.31 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -6.29 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -7.30 (((((......)))))........... New DP sens: 0.625, New DP ppv: 1.000, New DP F-measure: 0.769, New DP Energy: -6.39 ..((((((...)))))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.29 .((((((((....))))......)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -6.26 .....((((....)))).......... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.53 ....((((...............)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.93 New DP F-measure-avg: 0.295, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 5 > GaLV GGGUUCGGACCCCCUCCCCGAACCUAGGGUAACACUGACUGUGGAGGGG ((((((((..[[[[[[[)))))))).................]]]]]]] (((((((([[[[.{{{{)))))))).]]]]..(((.....)))..}}}} ((((((((..[[[[[[[)))))))).................]]]]]]] Energy of known structure: -15.34 Initial sens: 0.533, Initial ppv: 0.421, Initial F-measure: 0.471, Initial Energy: -11.94 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -15.34 ((((((((...[[[[..))))))))]]]]...(((.....)))...... New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -12.22 (((((((([[[[{{{{.)))))))).]]]]..(((.....)))..}}}} New DP sens: 0.533, New DP ppv: 0.421, New DP F-measure: 0.471, New DP Energy: -11.94 (((((((([[[[.{{{{)))))))).]]]]..(((.....)))..}}}} New DP sens: 0.533, New DP ppv: 0.421, New DP F-measure: 0.471, New DP Energy: -11.94 ((((((((..[[[{{{{)))))))).]]]...(((.....)))..}}}} New DP sens: 0.533, New DP ppv: 0.444, New DP F-measure: 0.485, New DP Energy: -11.53 (((((((([[[[.....)))))))).]]]]..(((.....)))...... New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -11.08 ((((((((.[[[[....)))))))).......(((.....)))..]]]] New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -10.88 ((((((((..[[[....)))))))).]]]...(((.....)))...... New DP sens: 0.533, New DP ppv: 0.571, New DP F-measure: 0.552, New DP Energy: -10.73 ((((((((...[[[[..)))))))).......(((.....)))..]]]] New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -10.63 ((((((((.[[[.....)))))))).......(((.....)))..]]]. New DP sens: 0.533, New DP ppv: 0.571, New DP F-measure: 0.552, New DP Energy: -9.85 ((((((((....[[[[.)))))))).......(((.....)))..]]]] New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -9.57 ((((((((.....[[[[)))))))).......(((.....)))..]]]] New DP sens: 0.533, New DP ppv: 0.533, New DP F-measure: 0.533, New DP Energy: -9.57 ((((((((.........)))))))).......(((.....)))...... New DP sens: 0.533, New DP ppv: 0.727, New DP F-measure: 0.615, New DP Energy: -9.23 (((........))).((((...(((((...........))).)).)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.36 ..........(((((((((.......))..............))))))) New DP sens: 0.467, New DP ppv: 0.778, New DP F-measure: 0.583, New DP Energy: -8.30 ((((....))))...((((...(((((...........))).)).)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -8.19 ((((....))))(((((((.......)))...(((.....)))..)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.91 (((.......)))..((((...(((((...........))).)).)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.81 .(((....)))(((([[[[......))))...(((.....)))..]]]] New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.74 .........((((...(((.......)))...(((.....)))..)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -7.51 New DP F-measure-avg: 0.396, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 19 > HIV-1-RT-1-17 agUAAUGACCAGAGGCCCAACUGGUAAACGGGCGGuc .......(((((..[[[[..)))))....]]]].... ......((((....((((...........)))))))) .......(((((..[[[[..)))))....]]]].... Energy of known structure: -8.53 Initial sens: 0.444, Initial ppv: 0.500, Initial F-measure: 0.471, Initial Energy: -5.64 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.53 ......((((....((((...........)))))))) New DP sens: 0.444, New DP ppv: 0.500, New DP F-measure: 0.471, New DP Energy: -5.64 .......(((((.[[[[...)))))........]]]] New DP sens: 0.556, New DP ppv: 0.556, New DP F-measure: 0.556, New DP Energy: -5.60 ..............((((...........)))).... New DP sens: 0.444, New DP ppv: 1.000, New DP F-measure: 0.615, New DP Energy: -4.95 .............((((...(((.....)))..)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.00 .......(((((........)))))............ New DP sens: 0.556, New DP ppv: 1.000, New DP F-measure: 0.714, New DP Energy: -3.69 ......((((....(((.....)))........)))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.37 New DP F-measure-avg: 0.479, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 6 > PLRV-W GCGGCACCGCCCGCCAAAACAAACGG ((((..[[[.)))).........]]] ((((......))))............ ((((..[[[.)))).........]]] Energy of known structure: -4.54 Initial sens: 0.571, Initial ppv: 1.000, Initial F-measure: 0.727, Initial Energy: -2.89 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -4.54 ..(((.[[[...)))........]]] New DP sens: 0.429, New DP ppv: 0.500, New DP F-measure: 0.462, New DP Energy: -3.92 ..(((.......)))........... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.13 ((((......))))............ New DP sens: 0.571, New DP ppv: 1.000, New DP F-measure: 0.727, New DP Energy: -2.89 (((....)))(((..........))) New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.07 ..(((...)))............... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -1.06 ......(((..............))) New DP sens: 0.429, New DP ppv: 1.000, New DP F-measure: 0.600, New DP Energy: -0.81 New DP F-measure-avg: 0.398, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 6 > SSTRAND_ID=PDB_00716; TYPE=Other Ribozyme; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=1SJF; ORGANISM=HOMO SAPIENS AUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC ..(((((((...[[[[[[(((.{{.....))))))))))}}....((((..........)))).....]]]]]] .((.(((((.((((.(((((......))))).))))))))).)).((((((((.....))))))))........ .((.(((((.((((.(((((.[[[[.))))).))))))))).)).((((((((.....))))))))...]]]]. Energy of known structure: -17.44 Initial sens: 0.000, Initial ppv: 0.000, Initial F-measure: 0.000, Initial Energy: -21.37 New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -22.16 .((.(((((.((((.(((((......))))).))))))))).)).(((((((.......)))))))........ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -21.72 .((((((((......(((((.[[[[.))))).)))))))).....((((((((.....))))))))...]]]]. New DP sens: 0.318, New DP ppv: 0.280, New DP F-measure: 0.298, New DP Energy: -21.27 .((((((((...[[[[[[......[[[[[[[.)))))))).((((.....))))...]]]]]]]....]]]]]] New DP sens: 0.591, New DP ppv: 0.520, New DP F-measure: 0.553, New DP Energy: -20.92 .((((((((...[[[[[[(((........))))))))))).....((((((((.....))))))))..]]]]]] New DP sens: 0.727, New DP ppv: 0.640, New DP F-measure: 0.681, New DP Energy: -20.90 .((.(((((.((((.(((((......))))).))))))))).))...(((((.(((....)))...)))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -20.65 .((((((((......(((((......))))).)))))))).....(((((((.......)))))))........ New DP sens: 0.318, New DP ppv: 0.350, New DP F-measure: 0.333, New DP Energy: -20.59 .((.(((((.((((.(((((.[[[[.))))).))))))))).)).((((..........))))......]]]]. New DP sens: 0.182, New DP ppv: 0.167, New DP F-measure: 0.174, New DP Energy: -19.78 .(((((((([[[[[.(((((.{{{{.))))).))))))))......]]]]]..(((....)))......}}}}. New DP sens: 0.318, New DP ppv: 0.280, New DP F-measure: 0.298, New DP Energy: -19.43 .((.(((((.((((.(((((.[[[[.))))).))))))))).))....((((((......))))))...]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -19.43 ....(((((..(((.(((((......))))).))).)))))....((((((((.....))))))))........ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -19.27 .((.(((((.((((.(((((......))))).))))))))).)).((((..........))))........... New DP sens: 0.182, New DP ppv: 0.200, New DP F-measure: 0.190, New DP Energy: -19.17 .((((((((......(((((.[[[[.))))).)))))))).....((((..........))))......]]]]. New DP sens: 0.500, New DP ppv: 0.524, New DP F-measure: 0.512, New DP Energy: -18.89 .((.(((((.((((.(((((......))))).))))))))).))....((((((......))))))........ New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -18.82 .(((((((([[[[[.(((((......))))).))))))))......]]]]]......(((........)))... New DP sens: 0.318, New DP ppv: 0.333, New DP F-measure: 0.326, New DP Energy: -18.60 .((((((((...[[[[[[(((........))))))))))).....((((..........)))).....]]]]]] New DP sens: 0.909, New DP ppv: 0.952, New DP F-measure: 0.930, New DP Energy: -18.52 ....(((((..(((.(((((......))))).))).)))))......(((((.(((....)))...)))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -18.46 .((((((((......(((((......))))).))))))))(....).(((((.(((....)))...)))))... New DP sens: 0.318, New DP ppv: 0.318, New DP F-measure: 0.318, New DP Energy: -18.37 .((((((((......(((((......))))).)))))))).....((((..........))))........... New DP sens: 0.500, New DP ppv: 0.647, New DP F-measure: 0.564, New DP Energy: -18.04 ....(((((......(((((.[[[[.))))).....)))))....((((((((.....))))))))...]]]]. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -18.04 New DP F-measure-avg: 0.259, New DP F-measure-best: 0.930, New DP best-subopt: 15, New DP num-subopt: 19 > SSTRAND_ID=PDB_00944; TYPE=Synthetic RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2B57; ORGANISM=SYNTHETIC GACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUC ((((((.....(((((..[..[[)))))..........((((((]]...].))))))..)))))) ((((((.....(((((.......)))))..........((((((.......))))))..)))))) ((((((.....(((((.......)))))..........((((((.......))))))..)))))) Energy of known structure: 1.82 Initial sens: 0.850, Initial ppv: 1.000, Initial F-measure: 0.919, Initial Energy: -12.89 New DP sens: 0.850, New DP ppv: 1.000, New DP F-measure: 0.919, New DP Energy: -12.89 ..(((((....[[[[[.))))).]]]]]..........((((((.......))))))........ New DP sens: 0.550, New DP ppv: 0.688, New DP F-measure: 0.611, New DP Energy: -12.19 ...........(((((..[[[[[)))))..........((((((]]]]]..))))))........ New DP sens: 0.650, New DP ppv: 0.812, New DP F-measure: 0.722, New DP Energy: -11.37 ...........(((((.......)))))..........((((((.......))))))........ New DP sens: 0.550, New DP ppv: 1.000, New DP F-measure: 0.710, New DP Energy: -11.08 ...........((((([[[[[[[)))))..........((((((.......)))))).]]]]]]] New DP sens: 0.550, New DP ppv: 0.611, New DP F-measure: 0.579, New DP Energy: -10.62 New DP F-measure-avg: 0.708, New DP F-measure-best: 0.919, New DP best-subopt: 0, New DP num-subopt: 4 > SSTRAND_ID=PDB_01009; TYPE=Other RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2DU3; ORGANISM=ARCHAEOGLOBUS FULGIDUS GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC ((((((([.(((.].......)))..((((.......))))......(((((.......)))))))))))) (((((((....((((.((.(((((((....))))))).)).))))..(((((.......)))))))))))) (((((((..((((((...)))))).(((((.......))))).....(((((.......)))))))))))) Energy of known structure: -6.53 Initial sens: 0.600, Initial ppv: 0.480, Initial F-measure: 0.533, Initial Energy: -23.22 New DP sens: 0.950, New DP ppv: 0.826, New DP F-measure: 0.884, New DP Energy: -24.04 ((((((((((.((((.((.(((((((....))))))).)).)))).))((((.......)))))))))))) New DP sens: 0.550, New DP ppv: 0.407, New DP F-measure: 0.468, New DP Energy: -22.99 ((((((((.((((((...))))))((((((.......)))))).....((((.......)))))))))))) New DP sens: 0.900, New DP ppv: 0.750, New DP F-measure: 0.818, New DP Energy: -22.63 (((((((.......((((((((((((....)))))))...)))))..(((((.......)))))))))))) New DP sens: 0.600, New DP ppv: 0.500, New DP F-measure: 0.545, New DP Energy: -21.80 ((((((((......((((......((((((.......))))))...))))((.......))..)))))))) New DP sens: 0.650, New DP ppv: 0.650, New DP F-measure: 0.650, New DP Energy: -21.46 (((((((..((((....(((....)))...)))).............(((((.......)))))))))))) New DP sens: 0.600, New DP ppv: 0.632, New DP F-measure: 0.615, New DP Energy: -21.33 ((((((((......((((((((((((....)))))))...)))))...((((.......)))))))))))) New DP sens: 0.550, New DP ppv: 0.458, New DP F-measure: 0.500, New DP Energy: -21.03 ((((((((.((((....(((....)))...))))..............((((.......)))))))))))) New DP sens: 0.550, New DP ppv: 0.579, New DP F-measure: 0.564, New DP Energy: -20.43 ((((((((......((((....((((............))))....))))((.......))..)))))))) New DP sens: 0.450, New DP ppv: 0.500, New DP F-measure: 0.474, New DP Energy: -20.36 ((((((((.((((((...))))))..((((.....((.(((........))).))...)))).)))))))) New DP sens: 0.500, New DP ppv: 0.435, New DP F-measure: 0.465, New DP Energy: -19.84 New DP F-measure-avg: 0.598, New DP F-measure-best: 0.884, New DP best-subopt: 0, New DP num-subopt: 9 > SSTRAND_ID=PDB_01021; TYPE=Synthetic RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2EET; ORGANISM=SYNTHETIC GGACAUGUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACCAUGUCCa .((((((...(.(((((..[..[[))))).)........((((((]]...].))))))..)))))).. (((((((.....(((((.......)))))..........((((((.......))))))..))))))). (((((((.....(((((.......)))))..........((((((.......))))))..))))))). Energy of known structure: 0.90 Initial sens: 0.810, Initial ppv: 0.944, Initial F-measure: 0.872, Initial Energy: -17.43 New DP sens: 0.810, New DP ppv: 0.944, New DP F-measure: 0.872, New DP Energy: -17.43 New DP F-measure-avg: 0.872, New DP F-measure-best: 0.872, New DP best-subopt: 0, New DP num-subopt: 0 > SSTRAND_ID=PDB_01023; TYPE=Synthetic RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2EEV; ORGANISM=SYNTHETIC GGACAUACAAUCGCGUGGAUAUGGCACGCAAGUUUCUGCCGGGCACCGUAAAUGUCCGACUAUGUCCa (((((((...(.(((((..[..[[))))).)........((((((]]...].))))))..))))))). (((((((.....(((((.......)))))..........((((((.......))))))..))))))). (((((((.....(((((.......)))))..........((((((.......))))))..))))))). Energy of known structure: -0.53 Initial sens: 0.818, Initial ppv: 1.000, Initial F-measure: 0.900, Initial Energy: -16.20 New DP sens: 0.818, New DP ppv: 1.000, New DP F-measure: 0.900, New DP Energy: -16.20 (((((((.......(((((......((....)).)))))((((((.......))))))..))))))). New DP sens: 0.591, New DP ppv: 0.650, New DP F-measure: 0.619, New DP Energy: -12.51 New DP F-measure-avg: 0.760, New DP F-measure-best: 0.900, New DP best-subopt: 0, New DP num-subopt: 1 > SSTRAND_ID=RFA_00632; TYPE=Hepatitis Delta Virus Ribozyme; EXT_SOURCE=Rfam Database; EXT_ID=RF00094 AB037947.1/775-685; ORGANISM=Hepatitis delta virus GUGGCCGGCAUGGCCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACGAUCCGAGGGGACUGUCCCUCUCGAGAAUCGGCAAAUGGGGCCCC ...[[[[[[...(((((((((........)))]]]]]].......(((((.(((((((...).))))))..).)))).....))))))... .((.(((((.((((.(((((......))))).))))))))).)).((((((((((((......))))))).).))))......((....)) .((((((((..[[[[[[[(((........))))))))))).((..((((((((((((......))))))).).))))))...]]]]]]].. Energy of known structure: -18.87 Initial sens: 0.407, Initial ppv: 0.367, Initial F-measure: 0.386, Initial Energy: -25.19 New DP sens: 0.963, New DP ppv: 0.812, New DP F-measure: 0.881, New DP Energy: -28.80 ...((((((..[[[[[[[........))))))(((((...(....)..(((((((((......))))))).)).)))))...]]]]]]].. New DP sens: 0.481, New DP ppv: 0.464, New DP F-measure: 0.473, New DP Energy: -26.08 .((.(((((.((((.(((((......))))).))))))))).))....(((((((((......))))))).))...(((.......))).. New DP sens: 0.259, New DP ppv: 0.250, New DP F-measure: 0.255, New DP Energy: -26.00 .((.(((((.((((.(((((......))))).))))))))).))......(((((((......)))))))......(((.......))).. New DP sens: 0.222, New DP ppv: 0.231, New DP F-measure: 0.226, New DP Energy: -25.93 ...((((((..[[[[[[[........))))))(((((...(....)....(((((((......)))))))....)))))...]]]]]]].. New DP sens: 0.444, New DP ppv: 0.462, New DP F-measure: 0.453, New DP Energy: -25.91 ..(((((((.((((.(((((......))))).)))))))..((..((((((((((((......))))))).).))))))......)))).. New DP sens: 0.407, New DP ppv: 0.367, New DP F-measure: 0.386, New DP Energy: -25.23 ...((((((.....[[[[[[[.....))))))...]]]]]]]......(((((((((......))))))).))...(((.......))).. New DP sens: 0.259, New DP ppv: 0.280, New DP F-measure: 0.269, New DP Energy: -25.08 ...((((((.....[[[[[[[.....))))))...]]]]]]]........(((((((......)))))))......(((.......))).. New DP sens: 0.222, New DP ppv: 0.261, New DP F-measure: 0.240, New DP Energy: -25.01 ...(((((...[[[[[[[((((((..((....)).))..)))).....(((((((((......))))))).)).)))))...]]]]]]].. New DP sens: 0.481, New DP ppv: 0.448, New DP F-measure: 0.464, New DP Energy: -24.99 ..(((((((......(((((......))))).)))))))((((..((((((((((((......))))))).).)))).........)))). New DP sens: 0.630, New DP ppv: 0.607, New DP F-measure: 0.618, New DP Energy: -24.95 ...(((((...[[[[[[[((((((..((....)).))..)))).......(((((((......)))))))....)))))...]]]]]]].. New DP sens: 0.444, New DP ppv: 0.444, New DP F-measure: 0.444, New DP Energy: -24.94 ...((((((...[[[[..{{{{{...))))))(((((..]]]].....(((((((((......))))))).)).)))))....}}}}}... New DP sens: 0.259, New DP ppv: 0.241, New DP F-measure: 0.250, New DP Energy: -24.85 ...((((((...[[[[..{{{{{...))))))(((((..]]]].......(((((((......)))))))....)))))....}}}}}... New DP sens: 0.222, New DP ppv: 0.222, New DP F-measure: 0.222, New DP Energy: -24.80 .((((((((......(((((......))))).)))))))).((..((((((((((((......))))))).).))))))............ New DP sens: 0.630, New DP ppv: 0.630, New DP F-measure: 0.630, New DP Energy: -24.39 ..(((((((......(((((......))))).)))))))((((.....(((((((((......))))))).)).(((.....))).)))). New DP sens: 0.481, New DP ppv: 0.464, New DP F-measure: 0.473, New DP Energy: -24.38 .((.(((((.((((.(((((......))))).))))))))).)).......((((((....)))))).........(((.......))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -24.22 ..(((((((......(((((......))))).)))))))((((.......(((((((......)))))))....(((.....))).)))). New DP sens: 0.444, New DP ppv: 0.462, New DP F-measure: 0.453, New DP Energy: -24.21 .((((((((..[[[[[[[(((........)))))))))))(....)..(((((((((......))))))).)).........]]]]]]].. New DP sens: 0.815, New DP ppv: 0.786, New DP F-measure: 0.800, New DP Energy: -24.17 ...((((((..[[[[[[[........))))))(((((...(....).....((((((....)))))).......)))))...]]]]]]].. New DP sens: 0.222, New DP ppv: 0.240, New DP F-measure: 0.231, New DP Energy: -24.12 ...((((((.[[[[[...{{{{{...))))))...]]]]].((..((((((((((((......))))))).).))))))....}}}}}... New DP sens: 0.407, New DP ppv: 0.367, New DP F-measure: 0.386, New DP Energy: -24.03 New DP F-measure-avg: 0.408, New DP F-measure-best: 0.881, New DP best-subopt: 0, New DP num-subopt: 19 > SSTRAND_ID=RFA_00636; TYPE=Hepatitis Delta Virus Ribozyme; EXT_SOURCE=Rfam Database; EXT_ID=RF00094 M84917.1/773-684; ORGANISM=Hepatitis delta virus GUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACAUUCCGAGGGGACCGUCCUCCUCGGUAAUGGCGAAUGGGACCCA ...[[[[[[...(((((((((........)))]]]]]].......(((((((((((((...).)))))))).)))).....))))))... .((.(((((.((((.(((((......))))).))))))))).)).((((((((((((......)))))))).)))).............. .((((((((..[[[[[[[(((........))))))))))).((..((((((((((((......)))))))).))))))...]]]]]]].. Energy of known structure: -21.95 Initial sens: 0.429, Initial ppv: 0.429, Initial F-measure: 0.429, Initial Energy: -27.01 New DP sens: 0.964, New DP ppv: 0.844, New DP F-measure: 0.900, New DP Energy: -29.58 .((((((((..[[[[[[[(((........))))))))))).....((((((((((((......)))))))).)))).....]]]]]]].. New DP sens: 0.964, New DP ppv: 0.900, New DP F-measure: 0.931, New DP Energy: -28.64 .((.(((((.((((.(((((......))))).))))))))).)).((((((((((((......)))))))).)))).............. New DP sens: 0.429, New DP ppv: 0.429, New DP F-measure: 0.429, New DP Energy: -27.01 .((((((((..[[[[[[[......[[[[[[..))))))))(....)...((((((((......))))))))...]]]]]].]]]]]]].. New DP sens: 0.714, New DP ppv: 0.667, New DP F-measure: 0.690, New DP Energy: -26.89 ...((((((.....[[[[[[[.....))))))...]]]]]]]...((((((((((((......)))))))).)))).............. New DP sens: 0.429, New DP ppv: 0.480, New DP F-measure: 0.453, New DP Energy: -26.78 .((((((((......(((((......))))).)))))))).((..((((((((((((......)))))))).))))))............ New DP sens: 0.643, New DP ppv: 0.667, New DP F-measure: 0.655, New DP Energy: -26.60 .((((((((......(((((......))))).)))))))).....((((((((((((......)))))))).)))).............. New DP sens: 0.643, New DP ppv: 0.720, New DP F-measure: 0.679, New DP Energy: -26.02 .((.(((((.((((.(((((......))))).))))))))).)).....((((((((......))))))))...(((..........))) New DP sens: 0.286, New DP ppv: 0.296, New DP F-measure: 0.291, New DP Energy: -25.18 ....(((((..(((.(((((......))))).))).)))))....((((((((((((......)))))))).)))).............. New DP sens: 0.429, New DP ppv: 0.480, New DP F-measure: 0.453, New DP Energy: -25.05 ...((((((.....[[[[[[[.....))))))...]]]]]]].......((((((((......))))))))...(((..........))) New DP sens: 0.286, New DP ppv: 0.333, New DP F-measure: 0.308, New DP Energy: -24.86 ....(((((..(((.(((((......))))).))).)))))((..((((((((((((......)))))))).))))))............ New DP sens: 0.429, New DP ppv: 0.444, New DP F-measure: 0.436, New DP Energy: -24.68 ...((((((..[[[[[[[........))))))(((.....)))..((((((((((((......)))))))).)))).....]]]]]]].. New DP sens: 0.643, New DP ppv: 0.643, New DP F-measure: 0.643, New DP Energy: -24.66 ....(((((..[[[[[[[(((........)))....)))))....((((((((((((......)))))))).)))).....]]]]]]].. New DP sens: 0.750, New DP ppv: 0.778, New DP F-measure: 0.764, New DP Energy: -24.61 ....(((((..[[[[[[[(((........)))....)))))((..((((((((((((......)))))))).))))))...]]]]]]].. New DP sens: 0.750, New DP ppv: 0.724, New DP F-measure: 0.737, New DP Energy: -24.60 .((((((((..[[[[[[[(((........)))))))))))(....)...((((((((......))))))))..........]]]]]]].. New DP sens: 0.821, New DP ppv: 0.852, New DP F-measure: 0.836, New DP Energy: -24.52 ...........(((((((((((((..((....)).))..))))..((((((((((((......)))))))).)))).....))))))).. New DP sens: 0.643, New DP ppv: 0.667, New DP F-measure: 0.655, New DP Energy: -24.21 ....(((((..[[[[[[[......[[[[[[......)))))........((((((((......))))))))...]]]]]].]]]]]]].. New DP sens: 0.500, New DP ppv: 0.538, New DP F-measure: 0.519, New DP Energy: -23.45 ...........(((((((.........(((((....)))))....((((((((((((......)))))))).)))).....))))))).. New DP sens: 0.643, New DP ppv: 0.750, New DP F-measure: 0.692, New DP Energy: -23.37 ...((((((.....[[[[[[[{{{{{))))))...]]]]]]]...........}}}}}..(((((..(((.......)))..)))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -23.35 .((.(((((.((((.(((((.[[[[[))))).))))))))).)).........]]]]]..(((((..(((.......)))..)))))... New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -23.15 New DP F-measure-avg: 0.553, New DP F-measure-best: 0.931, New DP best-subopt: 1, New DP num-subopt: 19 > SSTRAND_ID=TMR_00007; TYPE=Transfer Messenger RNA; EXT_SOURCE=tmRNA Database; EXT_ID=Acid.caps._TRW-240015_1-352; ORGANISM=NULL CGGGGGGUGGGCACCCGUAAUCGCUCGCA [[[[..((((((.]]]].....)))))). ((((..[[[[[[.)))).....]]]]]]. ((((..[[[[[[.)))).....]]]]]]. Energy of known structure: -8.90 Initial sens: 1.000, Initial ppv: 1.000, Initial F-measure: 1.000, Initial Energy: -8.90 New DP sens: 1.000, New DP ppv: 1.000, New DP F-measure: 1.000, New DP Energy: -8.90 ...((([[[[[[.)))......]]]]]]. New DP sens: 0.600, New DP ppv: 0.667, New DP F-measure: 0.632, New DP Energy: -8.05 ..(((.[[[[[[.)))......]]]]]]. New DP sens: 0.600, New DP ppv: 0.667, New DP F-measure: 0.632, New DP Energy: -7.99 (((([[[[[[...))))...]]]]]]... New DP sens: 0.400, New DP ppv: 0.400, New DP F-measure: 0.400, New DP Energy: -7.94 ..(.((((((..........)))))).). New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -5.43 ......((((((..........)))))). New DP sens: 0.600, New DP ppv: 1.000, New DP F-measure: 0.750, New DP Energy: -5.41 ((((.........))))............ New DP sens: 0.400, New DP ppv: 1.000, New DP F-measure: 0.571, New DP Energy: -4.29 ((((((((....)))).......)))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -4.00 ...(((.......)))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.52 ....((((....))))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.51 ..(((........)))............. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -3.46 ((((..((((....)))).....)))).. New DP sens: 0.000, New DP ppv: 0.000, New DP F-measure: 0.000, New DP Energy: -2.52 New DP F-measure-avg: 0.332, New DP F-measure-best: 1.000, New DP best-subopt: 0, New DP num-subopt: 11