> SSTRAND_ID=Bt_PrP; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; GCCCCAUGGAGGUGGCUGGGGCCAGCCUCAUGGAGGUGGCUGGGG ...[[[[[[............((((((]]]]]]....)))))).. > SSTRAND_ID=BWYV; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGCGCGGCACCGUCCGCGGAACAAACGG ..(((((..[[[[)))))......]]]] > SSTRAND_ID=Ec_PK1; TYPE=tmRNA; EXT_SOURCE=van Batenburg et al 2001; CGAGGGGCGGUUGGCCUCGUAAAAAGCCGC [[[[[.((((((..]]]]].....)))))) > SSTRAND_ID=Ec_PK4; TYPE=tmRNA; EXT_SOURCE=van Batenburg et al 2001; GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGAC ((((((((((.(((.[[[.[[[))).)))))))))).........]]].]]] > SSTRAND_ID=EC_S15; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; GGGAUCGCUGAAUUAGAGAUCGGCGUCCUUUCAUUCUAUAUACUUUGGAGUUUUAAAAUGUCUCUAA ((((.((((((.[[[[[[[))))))))))...............................]]]]]]] > SSTRAND_ID=HDV; TYPE=hepatitis delta virus ribozyme; EXT_SOURCE=Isambert and Siggia 2000; ggccggcatggtcccagcctcctcgctggcgccggctgggcaacauuccgaggggaccguccccucgguaauggcgaaugggaccca [[[[[[[..((((((((((........)))]]]]]]]......(((((((((((((...))))))))).)))).....))))))).. > SSTRAND_ID=HDV_anti; TYPE=anti-genomic HDV; EXT_SOURCE=Ferre-D'Amareand et al 1998; GGGUCGGCAUGGCAUCUCCACCUCCUCGCGGUCCGACCUGGGCAUCCGAAGGAGGACGCACGUCCACUCGGAUGGCUAAGGGAGAGCCACU .((((((........[[[[(((.......)))))))))....(((((((....((((....))))..)))))))......]]]]....... > SSTRAND_ID=HIVRT32; TYPE=HIV-1-RT ligand RNA; EXT_SOURCE=Turek et al 1992; UCAAGUAUUCCGAAGCUCAACGGGAAAAUGAGCUA .......[[[[[.((((((.]]]]]...)))))). > SSTRAND_ID=HIVRT322; TYPE=HIV-1-RT ligand RNA; EXT_SOURCE=Turek et al 1992; UCAAGUAUUCCGAAGGGUAACGGGAAAAUGCCCUA .......[[[[[.((((((.]]]]]...)))))). > SSTRAND_ID=HIVRT33; TYPE=HIV-1-RT ligand RNA; EXT_SOURCE=Turek et al 1992; UCAAGUAUUCCGAAGCUUGACGGGAAAAUAAGCUA .......[[[[[.((((((.]]]]]...)))))). > SSTRAND_ID=Hs_Prp; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; GCCUCAUGGUGGUGGCUGGGGGCAGCCUCAUGGUGGUGGCUGGGG ...((((((.............[[[[[))))))....]]]]]... > SSTRAND_ID=LP_PK1; TYPE=tmRNA; EXT_SOURCE=van Batenburg et al 2001; CGAGAAGGAGAUCUCUCGUAAAUAAGACUC [[[[[..(((.((]]]]].......))))) > SSTRAND_ID=minimalIBV; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGGGUAUCAGUCAGGCUCGGCUGGUACCCCUUGCAAAGCGAGCCU (((((((((((..[[[[[[)))))))))))........]]]]]]. > SSTRAND_ID=MMTV; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGGGCAGUCCCCUAGCCCCACUCAAAAGGGGGAU [[[[[..((((((.]]]]]........)))))). > SSTRAND_ID=MMTV_vpk; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGCGCAGUGGGUCAGCGCCACUCAAAAGGCCCAU [[[[[..((((((.]]]]]........)))))). > SSTRAND_ID=pKA_A; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGCCGCCAGGCUCCAGCGGCCUUGCAAAAGGAGCCU [[[[[[..((((((.]]]]]]........)))))). > SSTRAND_ID=satRPV; TYPE=ribozyme; EXT_SOURCE=van Batenburg et al 2001; ACAGAGCGCGUACUGUCUGACGACGUAUCCGCGCGGACUAGAAGGCUGGUGCCUCGUCCAACAAAUAGAUACA ((((.[[[[[..))))........(((((]]]]]((((....((((....)))).))))........))))). > SSTRAND_ID=SRV_1; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; GGGGCCAGCCCCAGGCCCCGAAACAAGCUUAUGGGGCA ((((((.[[[[[.)))))).............]]]]]. > SSTRAND_ID=T2_gene32; TYPE=viral ribosomal RNA frame-shifting signals; EXT_SOURCE=Giedroc et al 2000; CUGACCAGCUAUGAGGUCAUACAUCGUCAUAGC .[[[[[.(((((((]]]]].......))))))) > SSTRAND_ID=T4_gene32; TYPE=mRNA; EXT_SOURCE=van Batenburg et al 2001; UGCCAGCUAUGAGGUAAAGUGUCAUAGC [[[[.(((((((]]]].....))))))) > SSTRAND_ID=TMV.L; TYPE=viral RNA; EXT_SOURCE=van Belkum et al 1985; AUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGG ............[[[.((((]]].....))))[[[.((((((]]]...))))))[[[[.....(((((]]]]......).)))) > SSTRAND_ID=Tt_LSU_P3P7; TYPE=ribozyme; EXT_SOURCE=van Batenburg et al 2001; AGACCGUCAAACACAGACUAAAUGUCGGUCGGGGAAGAUGUAUUCUUCUCAUAAGAUAUAGUCGG .(((((.((....[.[[[[[..)).))))).(((((((.....)))))))........]]]]]]. > SSTRAND_ID=TYMV; TYPE=viral RNA; EXT_SOURCE=Deiman et al 1997; UUAGCUCGCCAGUUAGCGAGGUCUGUCCCCACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACCA ....(((((......)))))(((((((.......)))))))...((((.......))))[[[...((((((]]]...))))))... > AKV-MuLV GGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCACUGUCGGGGGGC ((((((((.[[[[[[[)))).))))..................]]]]]]] > BaEV GGGCUCUGGAGCCCCCCCCGAGCCCCGGCUAACUCUAUCUGUAGGGGGGC ((((((.((.[[[[[[[))))))))..................]]]]]]] > BLV GGGGGGACUUAGCGCCCCCCAAACCGU ((((((.....[[[))))))....]]] > Bp_PK2 CCGCUGCACUGAUCUGUCCUUGGGUCAGGCGGGGGAAGGCAACUUCCCAGGGGGCAACCCCGAACCGCAGCAGCGACAUUCACAAGGAAU .((((((..(((....[[[[[[..))).((((((((((....)))))).((((....))))...)))).)))))).......]]]]]].. > BVDV_IRES GGGUAGCAACAGUGGUGAACAGCCUGAUAGGGUGCUGCAGAGGCCCACUGUAUUGCUACUAAAAAUCUCUGCU .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).....]]]]]]]. > BYDV-NY-RPV GGCGGCGGCGUCCGCCGUAACAAACGC (((((..[[[[))))).......]]]] > Cas-Br-E-MuLv GGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGC ((((((((.[[[[[[[)))).))))..................]]]]]]] > CoxB3 ACCCUACUGUGCUAACCGAACCAGAUAACGGUACAGUAGGGGUAAAUUCUCCGCAUUCGGUGCGGAAAAAAAA .((((((((((((.[[[[[[.........)))))))))))).....((.(((((.]]]]]]))))).)).... > CSFV_IRES GACUAGCCGUAGUGGCGAACGACCUGAUAGGGUGCUGCAGAGGCCCACUAUUAGGCUAGUAUAAAAAUCUCUGCUG .((((((((((((((......((((....))))...[[[[[[[.)))))))..))))))).......]]]]]]].. > EIAV GGGGCUCAAGGGAGGCCCCAGAAACAAACUUUCCC ((((((...[[[[))))))............]]]] > FeLV GGGCCAGGACCCCCCCCCCUGAGCCCAGGAUAACCUUAAGAAUAGGGGGG ((((((((...[[[[[[)))).))))..................]]]]]] > FIV GGGGCGAGCUGCAGCCCCAGUGAAUCAAAUGCAGC [[[[[..((((((]]]]]...........)))))) > HCV_229E CGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGUAACAGUUAUGGACCACGAGCAGUCCAUG ((((((((((((...[[[[[)))))))))))).......(((((((..]]]]].))))))) > HCV_Ires CCUCCCGGGAGAACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG (((((((((......(((......)))((.[[[[[[.))))))))))).]]]]]]. > HDV-It_g UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACAUUCCGAGGGGACCGUCCCCUCGGUAAUGGCGAAUGGGACCCA .(((((((..[[[[[[[(((.[[.....))))))))))]]....(((((((((((((...))))))))).)))).....]]]]]]].. > HIV-1-RT-1-1 ucaagAAUUCCGUUUUCAGUCGGGAAAAACUGAACAa .......[[[[[..((((((]]]]]...))))))... > HIV-1-RT-1-3a gAAUAUCUUCCGAAGCCGAACGGGAAAACCGGCaucu .......(((((..[[[[..)))))....]]]].... > HIV-1-RT-1-6 gAAGAAGAUUACCCAAGCGCAGGGGAGAAGCGCaucu ...........[[[..((((.]]].....)))).... > HIV-1-RT-1-7 agGAAUCGACCCAAGCCAAAGGGGAUAAUGCGGCauc .........[[[..(((...]]]........)))... > HIV-1-RT-1-8 ucaagGAUUAACCGACGCCAACGGGAGAAUGGCAGGGau ...........[[[..((((.]]].....))))...... > HIV-1-RT-1-9b gAGAGUAUCAUCCGUGCCGGCGGGAUAUCGGCGaucu ..........[[[[((((((]]]]...)))))).... > HIV-1-RT-2-10 agUAAAUGAGUCCGUAGGAGGCGGGAUAUCUCCaAcu ..........[[[[..(((((]]]]...))))).... > HIV-1-RT-2-11 gUCAUAUUACCGUUACUCCUCGGGAUAAAGGAGaucu .........[[[...(((((]]].....))))).... > HIV-1-RT-2-12 ucaagAAUAAUCCGACUCGCGGGAUAACGAGAAGaGc ..........[[[[.((((]]]]....))))...... > HIV-1-RT-2-1b caagAAUAUAUCCGAACUCGACGGGAUAACGAGAAGaGc ..........[[[[..((((.]]]]....))))...... > HIV-1-RT-2-2b gacaaucaagUACCUAGGUGAUAAAAGGGAGAACACGUGUGa ............[[[..(((.....]]].....)))...... > HIV-1-RT-2-3a gUUAAACAUAAUCCGUGAUCUUUCACACGGGAGaucuaugaaaga ...........[[[[[[.(((((((]]]]]].......))))))) > HIV-1-RT-2-4a agUAGAUAUCCGAAGCUCAACGGGAUAAUGAGCaucu ........[[[[..(((((.]]]]....))))).... > HIV-1-RT-2-5a ucaagAUAGUAUCCGUUCUUGAUCAUCGGGACAAAUGaucu ...........[[[[.....((((((]]]]....)))))). > HIV-1-RT-2-6b agUGAAACUUAACCGUUAUCAUAGAUCGGGACAAaucuauga ............[[[...((((((((]]].....)))))))) > HIV-1-RT-2-7a agAUAUGAUCCGUAAGAGGACGGGAUAAACCUCAac ........[[[[...((((.]]]].....))))... > HIV-1-RT-2-9 ucaagGUUUCCGAAAGAAAUCGGGAAAACUGucu .......(((((..[[[...)))))......]]] > Hs_SRP_pkn GCCGGGCGCGGUGGCGCGUGCCUGUAGUCCCAGCUACUCGGGAGGCU (((.((((((.[[[[.)))))).....((((.]]]]...))))))). > MMTVgag-pro GGGGCAGUCCCCUAGCCCCGCUCAAAAGGGGGAU [[[[[.(((((((.]]]]]........))))))) > Ni_VS GGGCGUCGUCGCCCCGAGUCGUAGCAGUUGACUACUGUUAUG ((((...[[[)))).....(((((((((.]]].))))))))) > PEMV UUCCGGUCGACUCCGGAGAAACAAAGUC ((((((..[[[[))))))......]]]] > PLRV-S GCGGCACCGUCCGCCAAAACAAACGG [[[[..((((]]]]........)))) > PRRSV-16244B GCCGCCAGCGGCUUGACCCGCUGUGGUCGCGGCGGCUUGGUUGUUACUGAGACAGCGG ((((((.((((((....[[[[[[[))))))))))))...............]]]]]]] > PRRSV-LV GCCGCCAGCGGCUUGACCCGCUGUGGCCGCGGCGGCCUAGUUGUGACUGAAACGGCGG ((((((.((((((....[[[[[[[))))))))))))...............]]]]]]] > SARS-CoV UGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUCUACAGGGCU (((((((((((...[[[[[[[)))))))))))((((((((.........))).)))))...]].]]]]] > SNV GGGUUCUCCCGCCCUCCGUGAACCCAGGCUAAAAGUUAAGGUAGGGGGGC [[[[[[.[..(((((((].]]]]]]..................))))))) > TMV-L GGGAUUCGAAUUCCCCCGGAACCCCCGGUUGGGGCCCA ...............[[[...((((]]]..)))).... > BChV GCGGCGCCGACCGCCAAACAACCGGC [[[[.((((.]]]]........)))) > CABYV GGCGGCGGCGACCGCCGAAACAACCGC (((((..[[[.)))))........]]] > GaLV GGGUUCGGACCCCCUCCCCGAACCUAGGGUAACACUGACUGUGGAGGGG ((((((((..[[[[[[[)))))))).................]]]]]]] > HIV-1-RT-1-17 agUAAUGACCAGAGGCCCAACUGGUAAACGGGCGGuc .......(((((..[[[[..)))))....]]]].... > PLRV-W GCGGCACCGCCCGCCAAAACAAACGG ((((..[[[.)))).........]]] > SSTRAND_ID=PDB_00716; TYPE=Other Ribozyme; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=1SJF; ORGANISM=HOMO SAPIENS AUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC ..(((((((...[[[[[[(((.{{.....))))))))))}}....((((..........)))).....]]]]]] > SSTRAND_ID=PDB_00944; TYPE=Synthetic RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2B57; ORGANISM=SYNTHETIC GACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUC ((((((.....(((((..[..[[)))))..........((((((]]...].))))))..)))))) > SSTRAND_ID=PDB_01009; TYPE=Other RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2DU3; ORGANISM=ARCHAEOGLOBUS FULGIDUS GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC ((((((([.(((.].......)))..((((.......))))......(((((.......)))))))))))) > SSTRAND_ID=PDB_01021; TYPE=Synthetic RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2EET; ORGANISM=SYNTHETIC GGACAUGUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACCAUGUCCa .((((((...(.(((((..[..[[))))).)........((((((]]...].))))))..)))))).. > SSTRAND_ID=PDB_01023; TYPE=Synthetic RNA; EXT_SOURCE=RCSB Protein Data Bank; EXT_ID=2EEV; ORGANISM=SYNTHETIC GGACAUACAAUCGCGUGGAUAUGGCACGCAAGUUUCUGCCGGGCACCGUAAAUGUCCGACUAUGUCCa (((((((...(.(((((..[..[[))))).)........((((((]]...].))))))..))))))). > SSTRAND_ID=RFA_00632; TYPE=Hepatitis Delta Virus Ribozyme; EXT_SOURCE=Rfam Database; EXT_ID=RF00094 AB037947.1/775-685; ORGANISM=Hepatitis delta virus GUGGCCGGCAUGGCCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACGAUCCGAGGGGACUGUCCCUCUCGAGAAUCGGCAAAUGGGGCCCC ...[[[[[[...(((((((((........)))]]]]]].......(((((.(((((((...).))))))..).)))).....))))))... > SSTRAND_ID=RFA_00636; TYPE=Hepatitis Delta Virus Ribozyme; EXT_SOURCE=Rfam Database; EXT_ID=RF00094 M84917.1/773-684; ORGANISM=Hepatitis delta virus GUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACAUUCCGAGGGGACCGUCCUCCUCGGUAAUGGCGAAUGGGACCCA ...[[[[[[...(((((((((........)))]]]]]].......(((((((((((((...).)))))))).)))).....))))))... > SSTRAND_ID=TMR_00007; TYPE=Transfer Messenger RNA; EXT_SOURCE=tmRNA Database; EXT_ID=Acid.caps._TRW-240015_1-352; ORGANISM=NULL CGGGGGGUGGGCACCCGUAAUCGCUCGCA [[[[..((((((.]]]].....)))))).