stack[5'-AA/UU-3'] stack[5'-AC/GU-3'] stack[5'-AG/CU-3'] stack[5'-AG/UU-3'] stack[5'-AU/AU-3'] stack[5'-AU/GU-3'] stack[5'-CA/UG-3'] stack[5'-CC/GG-3'] stack[5'-CG/CG-3'] stack[5'-CG/UG-3'] stack[5'-CU/GG-3'] stack[5'-GA/UC-3'] stack[5'-GC/GC-3'] stack[5'-GG/UC-3'] stack[5'-GU/GC-3'] stack[5'-GA/UU-3'] stack[5'-GG/UU-3'] stack[5'-GU/GU-3'] stack[5'-UA/UA-3'] stack[5'-UG/UA-3'] stack[5'-UG/UG-3'] tstackh[5'-AA/AU-3'] tstackh[5'-AA/CU-3'] tstackh[5'-AA/GU-3'] tstackh[5'-AA/UU-3'] tstackh[5'-AC/AU-3'] tstackh[5'-AC/CU-3'] tstackh[5'-AC/GU-3'] tstackh[5'-AC/UU-3'] tstackh[5'-AG/AU-3'] tstackh[5'-AG/CU-3'] tstackh[5'-AG/GU-3'] tstackh[5'-AG/UU-3'] tstackh[5'-AU/AU-3'] tstackh[5'-AU/CU-3'] tstackh[5'-AU/GU-3'] tstackh[5'-AU/UU-3'] tstackh[5'-CA/AG-3'] tstackh[5'-CA/CG-3'] tstackh[5'-CA/GG-3'] tstackh[5'-CA/UG-3'] tstackh[5'-CC/AG-3'] tstackh[5'-CC/CG-3'] tstackh[5'-CC/GG-3'] tstackh[5'-CC/UG-3'] tstackh[5'-CG/AG-3'] tstackh[5'-CG/CG-3'] tstackh[5'-CG/GG-3'] tstackh[5'-CG/UG-3'] tstackh[5'-CU/AG-3'] tstackh[5'-CU/CG-3'] tstackh[5'-CU/GG-3'] tstackh[5'-CU/UG-3'] tstackh[5'-GA/AC-3'] tstackh[5'-GA/CC-3'] tstackh[5'-GA/GC-3'] tstackh[5'-GA/UC-3'] tstackh[5'-GC/AC-3'] tstackh[5'-GC/CC-3'] tstackh[5'-GC/GC-3'] tstackh[5'-GC/UC-3'] tstackh[5'-GG/AC-3'] tstackh[5'-GG/CC-3'] tstackh[5'-GG/GC-3'] tstackh[5'-GG/UC-3'] tstackh[5'-GU/AC-3'] tstackh[5'-GU/CC-3'] tstackh[5'-GU/GC-3'] tstackh[5'-GU/UC-3'] tstackh[5'-GA/AU-3'] tstackh[5'-GA/CU-3'] tstackh[5'-GA/GU-3'] tstackh[5'-GA/UU-3'] tstackh[5'-GC/AU-3'] tstackh[5'-GC/CU-3'] tstackh[5'-GC/GU-3'] tstackh[5'-GC/UU-3'] tstackh[5'-GG/AU-3'] tstackh[5'-GG/CU-3'] tstackh[5'-GG/GU-3'] tstackh[5'-GG/UU-3'] tstackh[5'-GU/AU-3'] tstackh[5'-GU/CU-3'] tstackh[5'-GU/GU-3'] tstackh[5'-GU/UU-3'] tstackh[5'-UA/AA-3'] tstackh[5'-UA/CA-3'] tstackh[5'-UA/GA-3'] tstackh[5'-UA/UA-3'] tstackh[5'-UC/AA-3'] tstackh[5'-UC/CA-3'] tstackh[5'-UC/GA-3'] tstackh[5'-UC/UA-3'] tstackh[5'-UG/AA-3'] tstackh[5'-UG/CA-3'] tstackh[5'-UG/GA-3'] tstackh[5'-UG/UA-3'] tstackh[5'-UU/AA-3'] tstackh[5'-UU/CA-3'] tstackh[5'-UU/GA-3'] tstackh[5'-UU/UA-3'] tstackh[5'-UA/AG-3'] tstackh[5'-UA/CG-3'] tstackh[5'-UA/GG-3'] tstackh[5'-UA/UG-3'] tstackh[5'-UC/AG-3'] tstackh[5'-UC/CG-3'] tstackh[5'-UC/GG-3'] tstackh[5'-UC/UG-3'] tstackh[5'-UG/AG-3'] tstackh[5'-UG/CG-3'] tstackh[5'-UG/GG-3'] tstackh[5'-UG/UG-3'] tstackh[5'-UU/AG-3'] tstackh[5'-UU/CG-3'] tstackh[5'-UU/GG-3'] tstackh[5'-UU/UG-3'] internal_AU_GU_closure_penalty internal_GA_AG_mismatch internal_UU_mismatch int11[5'-AUA/UUU-3'] int11[5'-AUC/GUU-3'] int11[5'-AUG/CUU-3'] int11[5'-AUU/AUU-3'] int11[5'-CAC/GAG-3'] int11[5'-CAG/CAG-3'] int11[5'-CAC/GCG-3'] int11[5'-CAG/CCG-3'] int11[5'-CAC/GGG-3'] int11[5'-CAG/CGG-3'] int11[5'-CCC/GAG-3'] int11[5'-CCC/GCG-3'] int11[5'-CCG/CCG-3'] int11[5'-CCC/GUG-3'] int11[5'-CCG/CUG-3'] int11[5'-CGC/GAG-3'] int11[5'-CGC/GGG-3'] int11[5'-CGG/CGG-3'] int11[5'-CUC/GCG-3'] int11[5'-CUA/UUG-3'] int11[5'-CUC/GUG-3'] int11[5'-CUG/CUG-3'] int11[5'-GAC/GAC-3'] int11[5'-GAC/GCC-3'] int11[5'-GAC/GGC-3'] int11[5'-GCC/GCC-3'] int11[5'-GCC/GUC-3'] int11[5'-GGC/GGC-3'] int11[5'-GUA/UUC-3'] int11[5'-GUC/GUC-3'] int11[5'-UUA/UUA-3'] int11_basic_mismatch int11_GG_mismatch int21[5'-CAC/GAAG-3'] int21[5'-CAC/GCAG-3'] int21[5'-CAC/GGAG-3'] int21[5'-CAC/GACG-3'] int21[5'-CAC/GCCG-3'] int21[5'-CAC/GGCG-3'] int21[5'-CAC/GAGG-3'] int21[5'-CAC/GCGG-3'] int21[5'-CAC/GGGG-3'] int21[5'-CCC/GAAG-3'] int21[5'-CCC/GCAG-3'] int21[5'-CCC/GUAG-3'] int21[5'-CCC/GACG-3'] int21[5'-CCC/GCCG-3'] int21[5'-CCC/GUCG-3'] int21[5'-CCC/GAUG-3'] int21[5'-CCC/GCUG-3'] int21[5'-CCC/GUUG-3'] int21[5'-CGC/GAAG-3'] int21[5'-CGC/GGAG-3'] int21[5'-CGC/GAGG-3'] int21[5'-CGC/GGGG-3'] int21[5'-CUC/GCCG-3'] int21[5'-CUC/GUCG-3'] int21[5'-CUC/GCUG-3'] int21[5'-CUC/GUUG-3'] int21[5'-GAG/CAAC-3'] int21[5'-GAG/CCAC-3'] int21[5'-GAG/CGAC-3'] int21[5'-GAG/CACC-3'] int21[5'-GAG/CCCC-3'] int21[5'-GAG/CGCC-3'] int21[5'-GAG/CAGC-3'] int21[5'-GAG/CCGC-3'] int21[5'-GAG/CGGC-3'] int21[5'-GCG/CAAC-3'] int21[5'-GCG/CCAC-3'] int21[5'-GCG/CUAC-3'] int21[5'-GCG/CACC-3'] int21[5'-GCG/CCCC-3'] int21[5'-GCG/CUCC-3'] int21[5'-GCG/CAUC-3'] int21[5'-GCG/CCUC-3'] int21[5'-GCG/CUUC-3'] int21[5'-GGG/CAAC-3'] int21[5'-GGG/CGAC-3'] int21[5'-GGG/CAGC-3'] int21[5'-GGG/CGGC-3'] int21[5'-GUG/CCCC-3'] int21[5'-GUG/CUCC-3'] int21[5'-GUG/CCUC-3'] int21[5'-GUG/CUUC-3'] int21_match int21_AU_closure int22[5'-AAAU/AAAU-3'] int22[5'-AACU/AACU-3'] int22[5'-AAGU/AAGU-3'] int22[5'-ACAU/ACAU-3'] int22[5'-ACCU/ACCU-3'] int22[5'-ACUU/ACUU-3'] int22[5'-AGAU/AGAU-3'] int22[5'-AGGU/AGGU-3'] int22[5'-AGUU/AGUU-3'] int22[5'-AUCU/AUCU-3'] int22[5'-AUGU/AUGU-3'] int22[5'-AUUU/AUUU-3'] int22[5'-CAAG/CAAG-3'] int22[5'-CACG/CACG-3'] int22[5'-CAGG/CAGG-3'] int22[5'-CCAG/CCAG-3'] int22[5'-CCCG/CCCG-3'] int22[5'-CCUG/CCUG-3'] int22[5'-CGAG/CGAG-3'] int22[5'-CGGG/CGGG-3'] int22[5'-CGUG/CGUG-3'] int22[5'-CUCG/CUCG-3'] int22[5'-CUGG/CUGG-3'] int22[5'-CUUG/CUUG-3'] int22[5'-GAAC/GAAC-3'] int22[5'-GACC/GACC-3'] int22[5'-GAGC/GAGC-3'] int22[5'-GCAC/GCAC-3'] int22[5'-GCCC/GCCC-3'] int22[5'-GCUC/GCUC-3'] int22[5'-GGAC/GGAC-3'] int22[5'-GGGC/GGGC-3'] int22[5'-GGUC/GGUC-3'] int22[5'-GUCC/GUCC-3'] int22[5'-GUGC/GUGC-3'] int22[5'-GUUC/GUUC-3'] int22[5'-UAAA/UAAA-3'] int22[5'-UACA/UACA-3'] int22[5'-UAGA/UAGA-3'] int22[5'-UCAA/UCAA-3'] int22[5'-UCCA/UCCA-3'] int22[5'-UCUA/UCUA-3'] int22[5'-UGAA/UGAA-3'] int22[5'-UGGA/UGGA-3'] int22[5'-UGUA/UGUA-3'] int22[5'-UUCA/UUCA-3'] int22[5'-UUGA/UUGA-3'] int22[5'-UUUA/UUUA-3'] int22_delta_same_size int22_delta_different_size int22_delta_1stable_1unstable int22_delta_AC int22_match internal_size[4] internal_size[5] internal_size[6] bulge_size[1] bulge_size[2] bulge_size[3] bulge_size[4] bulge_size[5] bulge_size[6] hairpin_size[3] hairpin_size[4] hairpin_size[5] hairpin_size[6] hairpin_size[7] hairpin_size[8] hairpin_size[9] terminal_AU_penalty hairpin_GGG hairpin_c1 hairpin_c2 hairpin_c3 multi_offset multi_helix_penalty multi_free_base_penalty intermolecular_initiation tetraloop[GGGGAC] tetraloop[GGUGAC] tetraloop[CGAAAG] tetraloop[GGAGAC] tetraloop[CGCAAG] tetraloop[GGAAAC] tetraloop[CGGAAG] tetraloop[CUUCGG] tetraloop[CGUGAG] tetraloop[CGAAGG] tetraloop[CUACGG] tetraloop[GGCAAC] tetraloop[CGCGAG] tetraloop[UGAGAG] tetraloop[CGAGAG] tetraloop[AGAAAU] tetraloop[CGUAAG] tetraloop[CUAACG] tetraloop[UGAAAG] tetraloop[GGAAGC] tetraloop[GGGAAC] tetraloop[UGAAAA] tetraloop[AGCAAU] tetraloop[AGUAAU] tetraloop[CGGGAG] tetraloop[AGUGAU] tetraloop[GGCGAC] tetraloop[GGGAGC] tetraloop[GUGAAC] tetraloop[UGGAAA]