(a) Complete the table, by replacing the "?"'s with the appropriate numbers.
(b) From the table, give the optimal local alignment for these two sequences.
As a bonus (for 5 marks), particularly if you already have algorithms background, you might also want to try exercise 2.12.
(b) Align the following two profiles of DNA sequences. Use the
score matrix in which a match gets a value of +2, a mismatch gets
a value of -1, and a (base,gap) pair gets a value of -4. (A
(gap,gap) pair gets a value of 0.)