Abstract |
A Monte Carlo method for Protein Folding
In my talk, I will present Monte Carlo method - Pruned Enriched Method by
Grassberger et al., it is based on sequential importance sampling.
1. Pruned Enriched Rosenblatt Method: I will introduce sequential importance
sampling, talk about it in relation to protein (polymers in general)
folding.
2. Ant Colony Introduction Paper: Introduce Ant Colony Optimization
Approach, talk about similarities and differences between two algorithms.
Reference:
P. Grassberger, H. Frauenkron, and W. Nadler. PERM: a Monte Carlo
Strategy for Simulating Polymers and Other Things. in Monte Carlo Approach
to Biopolymers and Protein Folding, eds. P. Grassberger et al. (World
Scientific, Singapore, 1998).
M. Dorigo, V. Maniezzo, and A. Colorni. (1996). The Ant System: Optimization
by a colony of cooperating agents. IEEE Transactions on Systems, Man, and
Cybernetics-Part B. 26(1):1-13.
The papers are available at
http://citeseer.nj.nec.com/grassberger98perm.html
ftp://iridia.ulb.ac.be/pub/mdorigo/journals/IJ.10-SMC96.pdf
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