Subject: | RNA Secondary Structure Comparison |
Presenter: | Anna Vasudevan |
Abstract |
RNA Secondary Structure Comparison
Due to protein regulation and catalytic properties, several functional
classes of RNA have specific, conserved secondary structure. This can be
used to find novel RNA molecules, discover the functionality of existing
molecules, and build phylogenetic trees for evolutionary analysis. A novel
method by Hin Gan et Al. is currently being used for the conversion of RNA
into a dual graph, and graph comparison is performed thereafter. Several
methods of comparison, ranging from approximate metrics to exact subgraph
isomorphism algorithms will be overviewed. These include Maximum Common Edge
Subgraph calculation, Graph Editing and Laplacian Matrix Metrics.
References: To be updated...
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