The
Bioinformatics / Algorithmics Reading Group
2011-2012 schedule: every other Tuesday 11:00-12:00 pm, in room X530. Undergraduate students are welcome to attend.
If you plan to attend the reading group regularly, please join the email list (jump to instructions).
| Date |
Time |
Presenter |
Paper / Topic / Title |
| Tuesday, July 10 |
11:00-12:00 |
Bonnie Kirkpatrick |
Reachability Bounds for Chemical Reaction Networks and Strand Displacement Systems
|
| Tuesday, July 10 |
11:00-12:00 |
Ian Wood |
Investigating transcript regulation in Drosophila melanogaster
|
| Tuesday, June 26 |
11:00-12:00 |
Shu Yang |
Computational Prediction for RNA-Protein Interaction
|
| Tuesday, June 19 |
11:00-12:00 |
Maria Victoria Monsalve |
Origin of Mummies in the Americas: Genetic Analysis
|
| Tuesday, June 12 |
11:00-12:00 |
Jing Yun Alice Zhu |
Comparative prediction for transient structures in co-transcriptioanl folding of non-coding RNA
|
| Tuesday, May. 15 |
11:00-12:00 |
Bonnie Kirkpatrick |
Biological Models with Combinatorial Spaces |
| Tuesday, April. 17 |
11:00-12:00 |
Monir Hajiaghayi |
Logistic regression or linear discriminative analysis? |
| Tuesday, April. 03 |
11:00-12:00 |
Rodrigo Goya |
Analyzing alternative expression with RNA-Seq in cancer samples |
| Tuesday, Mar. 20 |
11:00-12:00 |
Daniel Lai |
R-chie: a web server and R package for visualizing RNA secondary structures |
| Tuesday, Feb. 21 |
11:00-12:00 |
Jeff Proctor |
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? & Evidence for widespread association of mammalian splicing and
conserved long-range RNA structures |
| Tuesday, Feb. 21 |
11:00-12:00 |
Bonnie Kirkpatrick |
Expectation HMMs for Computation and Identifiability |
| Tuesday, Feb. 07 |
11:00-12:00 |
Yi Ding |
Statistical Approaches to RNA Secondary Structure Prediction and Applications |
| Tuesday, Jan. 24 |
11:00-12:00 |
Javad Safaei |
Modeling Human Kinases Target Sites |
| Tuesday, Dec.13 |
11:00-12:30 |
Tanya Berger-Wolf |
Computational Insights into the Social Life of Zebras (and other animals) |
| Tuesday, Nov. 29 |
11:00-12:00 |
Chris Thachuk |
Less Haste, Less Waste: On Recycling and its Limits in Strand
Displacement Systems |
| Tuesday, Nov. 15 |
11:00-12:00 |
Murray Patterson |
Variants of the Consecutive-Ones Property Motivated by the Reconstruction of Ancestral Species |
| Tuesday, Nov. 01 |
11:00-12:00 |
Alborz Mazloomian |
Inferring signaling pathways using perturbation techniques |
| Tuesday, Oct. 18 |
11:00-12:00 |
Jiarui Ding |
Driver mutation prediction |
| Tuesday, Oct. 04 |
11:00-12:00 |
Bonnie Kirkpatrick |
Inferring Cancer Genealogies |
| Tuesday, Sep. 20 |
11:00-12:00 |
Ryan Giuliany |
Exploring RNA-editing in cancer through simultaneous analysis of tumour genome and transcriptome sequencing data |
Subscribing to the Email List
To subscribe to the bioinformatics reading group email list, send an e-mail to majordomo@cs.ubc.ca with
the text 'subscribe bioinf-rg'. You should shortly receive a confirmation email with further instructions. The address of the list is bioinf-rg@cs.ubc.ca.
If the week's presentation is on a recent paper, the title and abstract of that paper that will be sent out to the email list
on the Friday before the presentation. The website is generally updated less promptly, so it is important to subscribe to list if you
wish to attend regularly.
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the text 'unsubscribe bioinf-rg'.